orphanet_based_silver_standard: Silver standard based on Orphanet <-> HPO/pheocode mapping
In liangyy/silver-standard-performance: Generating PR/ROC curves in light and flexible way
Description
Usage
Format
Source
Examples
Description
The Orphanet phenotype to Orphanet gene map and
the Orphanet phenotype to phecode/HPO map
are provided by Lisa Bastarache.
Usage
1
Format
a list of:
1. table: a data.frame with
column gene (with Ensembl ID, e.g. ENSG00000084754) ,
column HPO (HPO term in the format HP:0000512),
column phecode (e.g. 346),
column EFO (e.g. EFO:0004207);
2. script_info: meta information on how data set is generated.
Source
Source code generating this silver standard dataset
Examples
1
2
liangyy/silver-standard-performance documentation built on Dec. 5, 2019, 8:53 a.m.
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Description Usage Format Source Examples
Description
The Orphanet phenotype to Orphanet gene map and the Orphanet phenotype to phecode/HPO map are provided by Lisa Bastarache.
Usage
1 |
Format
a list of: 1. table: a data.frame with column gene (with Ensembl ID, e.g. ENSG00000084754) , column HPO (HPO term in the format HP:0000512), column phecode (e.g. 346), column EFO (e.g. EFO:0004207); 2. script_info: meta information on how data set is generated.
Source
Source code generating this silver standard dataset
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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