species_info: Species information table and lookup
In lianos/msigdb.data: Data package for query/retrieval of species specific MSigDB versions
Description
Usage
Arguments
Value
Examples
Description
species_info() returns a table of ncbi species id's, names, common name,
etc. species_lookup() performs fuzzy matches against the table to return
the species-level info for a query. The fuzzy match must start left-to-right.
Usage
1
2
3
species_info(hcop_only = FALSE)
species_lookup(query, stable = species_info(FALSE), ignore.case = TRUE)
Arguments
hcop_only
Only retrun species information for organisms that are
in the hcop() database.
Value
A single-row tibble with (numeric) species id, name, etc.
Examples
1
2
3
species_lookup("human")
species_lookup("scer")
species_lookup("hsapiens")
lianos/msigdb.data documentation built on June 16, 2020, 12:45 a.m.
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Description Usage Arguments Value Examples
Description
species_info() returns a table of ncbi species id's, names, common name,
etc. species_lookup() performs fuzzy matches against the table to return
the species-level info for a query. The fuzzy match must start left-to-right.
Usage
1 2 3 | species_info(hcop_only = FALSE)
species_lookup(query, stable = species_info(FALSE), ignore.case = TRUE)
|
Arguments
hcop_only |
Only retrun species information for organisms that are
in the |
Value
A single-row tibble with (numeric) species id, name, etc.
Examples
1 2 3 | species_lookup("human")
species_lookup("scer")
species_lookup("hsapiens")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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