inst/docker/NOTES.md

In lianos/sparrow.shiny: Provides shiny modules to visualize sparrow results

Using base bioconductor image

For the pending release of bioc3.11, using their ` container, there are some packages that won't get auto installed when doing "the easy" gitub install formultiGSEA.shiny@develop`, so run this after the bioconductor docker container starts up:

BiocManager::install(update = TRUE, ask = FALSE)
BiocManager::install("remotes")

BiocManager::install(c(
    "BiasedUrn",
    "BiocStyle",
    "DESeq2",
    "fgsea",
    "GO.db",
    "goseq",
    "msigdbr",
    "knitr",
    "PANTHER.db",
    "reactome.db",
    "statmod",
    "webshot"))

BiocManager::install("lianos/sparrow.shiny")

lianos/sparrow.shiny documentation built on Oct. 12, 2023, 2:43 a.m.