col
isn't
specified, but recenter
is (backported to release 3.14)calculateIndividualLogFC
is updated to handle situations when $genes
data.frame has column names that collide with statistics generated from
differential expression, like pval
, padg
, and AveExpr
. Thanks to
@sandersen12 for the bug report.x
) is the object (data.frame) to run an over
representation analysis against, and the second parameter is the GeneSetDb.y
that are not found
in the GeneSetDb used for scoring. This was changed so that gsva and ssGSEA
scores match the scores produced by a normal GSVA::gsva call. You can set
the drop.unconformed = TRUE
to retain the older behavior.Add the following code to your website.
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