Man pages for liesb/BIITE
Bayesian Immunogenicity Inference Tool for ELISpot
| BIITE-package | Bayesian Immunogenicity Inference Tool for ELISpot |
| generate_random_hypothesis | Generate a random hypothesis |
| get_acc_rate_chain | Acceptance Rate of an MH chain |
| get_evidence_1 | Evidence function |
| get_hla_ranking | Find pHLA combinations that explain positive ELISpot results... |
| get_KL_vs_unif | Kullback-Leibler divergence of a sample (with respect to the... |
| get_means_chain | Estimate posterior modes in the MH chain |
| get_mode | Estimate sample mode |
| get_modes_chain | Estimate posterior modes in the MH chain |
| get_overview_df | Overview of posterior modes, means, medians for all pHLA... |
| get_prior_hyp | P(H) |
| get_proposal | Choosing a proposal state |
| get_q_h1_given_h2 | Evaluate Q function |
| get_shape_df | Beta shape parameters for (one peptide):(all HLA)... |
| get_shape_params | Beta shape parameters |
| mh_chain | Metropolis-Hasting for a single peptide |
| one_time_step | One update of MH chain |
| plot_beta | Plotting a beta distribution with a given mode and standard... |
| plot_posteriors | Get a plot of the marginal posteriors for each pHLA... |
