Man pages for lifs-tools/rmzTab-m
R Package Client for mzTab-M Reference Implementation and Validation API
| ApiClient | ApiClient |
| ApiResponse | ApiResponse |
| Assay | Assay |
| as.scalar | Extends jsonlite's as.scalar method. |
| ColumnParameterMapping | ColumnParameterMapping |
| Comment | Comment |
| Contact | Contact |
| convertMzTab2MAF | convertMzTab2MAF |
| CV | CV |
| Database | Database |
| Error | Error |
| extractComments | Extract the Comment from data frame. |
| extractMetadata | Extract metadata from data frame. |
| extractSmallMoleculeEvidence | Extract the SmallMoleculeEvidence from data frame. |
| extractSmallMoleculeFeatures | Extract the SmallMoleculeFeatures from data frame. |
| extractSmallMoleculeSummary | Extract the SmallMoleculeSummary from data frame. |
| Instrument | Instrument |
| Metadata | Metadata |
| MsRun | MsRun |
| MzTab | MzTab |
| OptColumnMapping | OptColumnMapping |
| Parameter | Parameter |
| Publication | Publication |
| PublicationItem | PublicationItem |
| readMzTab | Read mzTab-M file into data frame. |
| readMzTabString | Read an mzTab-M string into a data frame. |
| safe_unbox | Extends jsonlite's safe_unbox method. |
| Sample | Sample |
| SampleProcessing | SampleProcessing |
| SmallMoleculeEvidence | SmallMoleculeEvidence |
| SmallMoleculeFeature | SmallMoleculeFeature |
| SmallMoleculeSummary | SmallMoleculeSummary |
| Software | Software |
| SpectraRef | SpectraRef |
| StudyVariable | StudyVariable |
| Uri | Uri |
| ValidateApi | Validate operations |
| validateMzTab | Validate the provided mztab object against the online mzTab-M... |
| ValidatePlainApi | ValidatePlain operations |
| ValidationMessage | ValidationMessage |
| valueOrDefault | Check if x is null. If so, return defaultValue, otherwise run... |
| writeMzTab | Write MzTab object as TSV to file. |
| writeMzTabJSON | Write MzTab object as JSON to file. |
