MzTab: MzTab

In lifs-tools/rmzTab-m: R Package Client for mzTab-M Reference Implementation and Validation API

MzTab

Description

MzTab Class

Format

An R6Class generator object

Public fields

metadata

Metadata

smallMoleculeSummary

list( SmallMoleculeSummary )

smallMoleculeFeature

list( SmallMoleculeFeature )

smallMoleculeEvidence

list( SmallMoleculeEvidence )

comment

list( Comment ) [optional]

Methods

Public methods

• MzTab$new()

• MzTab$toJSON()

• MzTab$fromJSON()

• MzTab$toJSONString()

• MzTab$fromJSONString()

• MzTab$toDataFrame()

• MzTab$fromDataFrame()

• MzTab$clone()

---

Method new()

Create an MzTab object.

Usage

MzTab$new(
  metadata,
  smallMoleculeSummary,
  smallMoleculeFeature,
  smallMoleculeEvidence,
  comment = NULL,
  ...
)

Arguments

metadata

The metadata Metadata.

smallMoleculeSummary

The list( SmallMoleculeSummary ).

smallMoleculeFeature

The list( SmallMoleculeFeature ).

smallMoleculeEvidence

The list( SmallMoleculeEvidence ).

comment

The list( Comment ).

...

local optional variable arguments

---

Method toJSON()

Serialize to list object suitable for jsonlite

Usage

MzTab$toJSON()

---

Method fromJSON()

Deserialize from jsonlite list object

Usage

MzTab$fromJSON(MzTabJson)

Arguments

MzTabJson

list object.

---

Method toJSONString()

Serialize to JSON string.

Usage

MzTab$toJSONString()

---

Method fromJSONString()

Deserialize from JSON string

Usage

MzTab$fromJSONString(MzTabJson)

Arguments

MzTabJson

JSON string

---

Method toDataFrame()

Serialize to data frame

Usage

MzTab$toDataFrame()

---

Method fromDataFrame()

Deserialize from MzTab data frame

Usage

MzTab$fromDataFrame(MzTabDataFrame)

Arguments

MzTabDataFrame

MzTab data frame

---

Method clone()

The objects of this class are cloneable with this method.

Usage

MzTab$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

lifs-tools/rmzTab-m documentation built on Jan. 26, 2023, 4:45 p.m.