align_by_map: alignment function
In lijing28101/fagin2: Annotate Orphan Genes
Description
Usage
Arguments
Value
View source: R/functions_alignments.R
Description
alignment function
Usage
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align_by_map(
queseq,
tarseq,
map,
queries = names(queseq),
permute = FALSE,
...
)
Arguments
queseq
a vector of query sequences
tarseq
a vector of target sequences
map
a data frame of mapping between query and target sequence
queries
a vector of gene names for query sequence
permute
a logical variable indicating whether want to permute
...
extra arguments
Value
a list of protein alignment result and calculate significance
lijing28101/fagin2 documentation built on Jan. 8, 2022, 3:15 a.m.
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Description Usage Arguments Value
View source: R/functions_alignments.R
Description
alignment function
Usage
1 2 3 4 5 6 7 8 | align_by_map(
queseq,
tarseq,
map,
queries = names(queseq),
permute = FALSE,
...
)
|
Arguments
queseq |
a vector of query sequences |
tarseq |
a vector of target sequences |
map |
a data frame of mapping between query and target sequence |
queries |
a vector of gene names for query sequence |
permute |
a logical variable indicating whether want to permute |
... |
extra arguments |
Value
a list of protein alignment result and calculate significance
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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