config_alignment-class: Alignment settings and thresholds
In lijing28101/fagin2: Annotate Orphan Genes
Description
For details on inputs see main package documentation
Slots
pvaluep-value thresholds for hit significance
alnratealignment rate thresholds for hit significance
simulationsimulation parameters
substitution_matrixthe Smith-Waterman amino acid substitution matrix
dna2dna_maxspacelargest size of string to compare
indel_thresholdI don't remember what this does (FIXME: the fuck kind of documentation is this?)
lijing28101/fagin2 documentation built on Jan. 8, 2022, 3:15 a.m.
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Description
For details on inputs see main package documentation
Slots
pvaluep-value thresholds for hit significance
alnratealignment rate thresholds for hit significance
simulationsimulation parameters
substitution_matrixthe Smith-Waterman amino acid substitution matrix
dna2dna_maxspacelargest size of string to compare
indel_thresholdI don't remember what this does (FIXME: the fuck kind of documentation is this?)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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