MQ_prep: Conversion of Maxquant search result file (i.e. msms.txt) to...
In lileir/mms2plot: Visualization of multiple MS/MS spectra for modified and non-modified peptides
Description
Usage
Arguments
Value
Examples
Description
Conversion of Maxquant search result file (i.e. msms.txt) to the mms2plot-required identification file.
Usage
1
MQ_prep(config_table_path, msms_path, output_path)
Arguments
config_table_path
File path of the table that contains four columns:the raw MS filepath,
the type of modifiation, mass shift and the tolerance of the mass shift.
Please see the user guide for the details.
msms_path
File path of the MaxQuant search result file (i.e. msms.txt).
output_path
a character string naming a output file as the identification txt file for mms2plot.
Value
No value is returned.
Examples
1
2
3
4
5
6
general_path = system.file( package = "mms2plot",dir = "extdata" )
setwd( general_path )
config_table_path = 'prep/user_table_forMSMS.txt'
msms_path = 'prep/MaxQuant/msms.txt'
output_path = 'prep/MaxQuant/conversion/identification.txt'
MQ_prep(config_table_path,msms_path,output_path)
lileir/mms2plot documentation built on June 17, 2020, 9:16 a.m.
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Description Usage Arguments Value Examples
Description
Conversion of Maxquant search result file (i.e. msms.txt) to the mms2plot-required identification file.
Usage
1 | MQ_prep(config_table_path, msms_path, output_path)
|
Arguments
config_table_path |
File path of the table that contains four columns:the raw MS filepath, the type of modifiation, mass shift and the tolerance of the mass shift. Please see the user guide for the details. |
msms_path |
File path of the MaxQuant search result file (i.e. msms.txt). |
output_path |
a character string naming a output file as the identification txt file for mms2plot. |
Value
No value is returned.
Examples
1 2 3 4 5 6 | general_path = system.file( package = "mms2plot",dir = "extdata" )
setwd( general_path )
config_table_path = 'prep/user_table_forMSMS.txt'
msms_path = 'prep/MaxQuant/msms.txt'
output_path = 'prep/MaxQuant/conversion/identification.txt'
MQ_prep(config_table_path,msms_path,output_path)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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