MZID_prep: Conversion of the research result with the mzid format to the...
In lileir/mms2plot: Visualization of multiple MS/MS spectra for modified and non-modified peptides
Description
Usage
Arguments
Value
Examples
Description
Conversion of the research result with the mzid format to the mms2plot-required identification file.
Usage
1
MZID_prep(path_user_table, output_path)
Arguments
output_path
a character string naming a output file as the identification txt file for mms2plot.
config_table_path
file path of the table that contains five columns: the raw MS filepath,
the type of modifiation, mass shift, the tolerance of the mass shift and the search result MZID filepath.
Please see teh user guide for the details.
Value
No value is returned.
Examples
1
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3
4
5
6
general_path = system.file( package = "mms2plot",dir = "extdata" )
setwd( general_path )
config_table_path = 'prep/user_table_forMSMS.txt'
path_user_table = 'prep/user_table_forMZID.txt'
output_path = 'prep/comet/conversion/identification.txt'
MZID_prep(path_user_table,output_path)#,dir_mzid)#label.by.Raw_seq_charge)
lileir/mms2plot documentation built on June 17, 2020, 9:16 a.m.
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Description Usage Arguments Value Examples
Description
Conversion of the research result with the mzid format to the mms2plot-required identification file.
Usage
1 | MZID_prep(path_user_table, output_path)
|
Arguments
output_path |
a character string naming a output file as the identification txt file for mms2plot. |
config_table_path |
file path of the table that contains five columns: the raw MS filepath, the type of modifiation, mass shift, the tolerance of the mass shift and the search result MZID filepath. Please see teh user guide for the details. |
Value
No value is returned.
Examples
1 2 3 4 5 6 | general_path = system.file( package = "mms2plot",dir = "extdata" )
setwd( general_path )
config_table_path = 'prep/user_table_forMSMS.txt'
path_user_table = 'prep/user_table_forMZID.txt'
output_path = 'prep/comet/conversion/identification.txt'
MZID_prep(path_user_table,output_path)#,dir_mzid)#label.by.Raw_seq_charge)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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