Man pages for lindsaysmoore/cellAlign
Global and local alignment of single cell trajectories

calcDistMatTitle Calculate dissimilarity matrix (local cost matrix)
findGlobalMinimaThis function calculates the global minima of the cost...
findLocalMinimaThis function calculates the local minima of the lm matrix;...
globalAlignTitle Performs global alignment between two single-cell...
ind2subTitle Convert linear indices to a row-columns matrix
interWeightsTitle interpolation of the expression data along one...
localAlignTitle Performs local alignment between two single-cell...
localAlignAutoThresholdTitle Performs local alignment between two single-cell...
mapRealDataGlobalTitle Mapping of real cells into the trajectory for global...
mapRealDataLocalTitle Mapping of real cells into the trajectory for local...
plotAlignTitle Plot the alignment over the dissimilarity matrix
plotMappingTitle Plot the alignment-based mapping between real cells...
pseudotimeClustTitle cluster genes based on their pseudotime shifts
scaleInterpolateTitle Scale interpolated data to [0,1]
sub2indTitle Convert a row-column vector to a linear index
lindsaysmoore/cellAlign documentation built on Jan. 26, 2018, 12:14 p.m.