interWeights: Title interpolation of the expression data along one...
In lindsaysmoore/cellAlign: Global and local alignment of single cell trajectories
Description
Usage
Arguments
Value
Description
Title interpolation of the expression data along one trajectory
Usage
1
interWeights(expDataBatch, trajCond, winSz, numPts)
Arguments
expDataBatch
raw single cell gene expression data (genes on rows, cells on columns)
trajCond
a vector of pseudo-time scores of the data-points whose length equals to the number of samples
winSz
window size of the interpolation
numPts
number of desired interpolated points
Value
a list of 3: interpolatedVals, error and pseudo-time scores of the interpolated points;
interpolatedVals: a matrix of the interpolated points (genes*numPts)
error: a matrix of interpolated error for each interpolated data-point (genes*numPts)
traj: pseudo-time scores of the interpolated points
lindsaysmoore/cellAlign documentation built on May 29, 2019, 3:42 a.m.
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Description Usage Arguments Value
Description
Title interpolation of the expression data along one trajectory
Usage
1 | interWeights(expDataBatch, trajCond, winSz, numPts)
|
Arguments
expDataBatch |
raw single cell gene expression data (genes on rows, cells on columns) |
trajCond |
a vector of pseudo-time scores of the data-points whose length equals to the number of samples |
winSz |
window size of the interpolation |
numPts |
number of desired interpolated points |
Value
a list of 3: interpolatedVals, error and pseudo-time scores of the interpolated points; interpolatedVals: a matrix of the interpolated points (genes*numPts) error: a matrix of interpolated error for each interpolated data-point (genes*numPts) traj: pseudo-time scores of the interpolated points
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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