globalAlign: Title Performs global alignment between two single-cell...
In lindsaysmoore/cellAlign: Global and local alignment of single cell trajectories

Title Performs global alignment between two single-cell gene-expression patterns

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globalAlign(x, y = NULL, dist.method = "Euclidean",
  step.pattern = symmetric2, distance.only = F, normDist = T,
  verbose = T, ...)

`x`	query data matrix: genes on rows and cells on columns OR local cost matrix
`y`	reference data matrix: genes on rows and cells on columns, unused if x is given as a cost matrix
`dist.method`	distance metric, used by the function "dist" in the package 'proxy'
`step.pattern`	a stepPattern object describing the local warping steps allowed with their cost
`distance.only`	only compute distance (no backtrack, faster)
`normDist`	logical; scale distance matrix?
`...`