API for linnykos/eSVD2
eSVD2 for performing the eSVD-DE for cohort-wide differential expression analysis
| Global functions | |
|---|---|
| .combine_two_named_lists | Source code |
| .compute_df | Man page Source code |
| .compute_matrix_mean | Source code |
| .compute_matrix_sd | Source code |
| .compute_mixture_gaussian_variance | Source code |
| .construct_averaging_matrix | Source code |
| .dat_to_nat.bernoulli | Source code |
| .dat_to_nat.curved_gaussian | Source code |
| .dat_to_nat.exponential | Source code |
| .dat_to_nat.gaussian | Source code |
| .dat_to_nat.neg_binom | Source code |
| .dat_to_nat.neg_binom2 | Source code |
| .dat_to_nat.poisson | Source code |
| .data_loader | Source code |
| .determine_individual_indices | Source code |
| .esvd_family | Source code |
| .factorize_matrix | Source code |
| .form_esvd_fit | Source code |
| .format_param_initialize | Source code |
| .format_param_nuisance | Source code |
| .format_param_posterior | Source code |
| .format_param_test_statistic | Source code |
| .generate_values | Source code |
| .get_object | Source code |
| .identification | Source code |
| .initialize_coefficient | Source code |
| .initialize_residuals | Source code |
| .irlba_custom | Source code |
| .l2norm | Source code |
| .mult_mat_vec | Source code |
| .mult_vec_mat | Source code |
| .multtest_locfdr | Source code |
| .multtest_simple | Source code |
| .multtest_truncatedGauss | Source code |
| .nat_to_canon | Source code |
| .nonzero_col | Source code |
| .nuisance_in_sequence | Source code |
| .onUnload | Source code |
| .opt_esvd_format_matrices | Source code |
| .opt_esvd_format_param | Source code |
| .opt_esvd_setup_z_mat | Source code |
| .opt_x | Source code |
| .opt_yz | Source code |
| .reparameterize | Man page Source code |
| .rotate | Source code |
| .rpsectra_custom | Source code |
| .svd_in_sequence | Source code |
| .svd_safe | Source code |
| compute_posterior | Man page Source code |
| compute_posterior.default | Man page Source code |
| compute_posterior.eSVD | Man page Source code |
| compute_pvalue | Man page Source code |
| compute_test_statistic | Man page Source code |
| compute_test_statistic.default | Man page Source code |
| compute_test_statistic.eSVD | Man page Source code |
| data_loader | Man page Source code |
| data_loader_description | Source code |
| estimate_nuisance | Man page Source code |
| estimate_nuisance.default | Man page Source code |
| estimate_nuisance.eSVD | Man page Source code |
| esvd_family | Man page Source code |
| feas_Xi_r | Source code |
| feas_YZj_r | Source code |
| fisher_test | Man page Source code |
| format_covariates | Man page Source code |
| gamma_rate | Source code |
| gandal_df | Man page |
| generate_data | Man page Source code |
| generate_null | Man page Source code |
| grad_Xi_r | Source code |
| grad_YZj_r | Source code |
| hessian_Xi_r | Source code |
| hessian_YZj_r | Source code |
| housekeeping_df | Man page |
| initialize_esvd | Man page Source code |
| log_gamma_rate | Source code |
| multtest | Man page Source code |
| objfn_Xi_r | Source code |
| objfn_YZj_r | Source code |
| objfn_all_r | Source code |
| opt_esvd | Man page Source code |
| opt_esvd.default | Man page Source code |
| opt_esvd.eSVD | Man page Source code |
| opt_x | Man page Source code |
| opt_yz | Man page Source code |
| print.esvd_data_loader | Man page Source code |
| reparameterization_esvd_covariates | Man page Source code |
| sfari_df | Man page |
| test_data_loader | Source code |
| velmeshev_gene_df | Man page |
