Files in lissettegomez/coMethDMR
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AnnotateResults.R R/CloseBySingleRegion.R R/CoMethAllRegions.R R/CoMethSingleRegion.R R/CpGsInfoAllRegions.R R/CpGsInfoOneRegion.R R/CreateOutputDF.R R/CreateRdrop.R R/FindComethylatedRegions.R R/GetCpGsInRegion.R R/GetResiduals.R R/MarkComethylatedCpGs.R R/WriteCloseByAllRegions.R R/data_betaMatrixChr22_df.R R/data_betaMatrix_ex1.R R/data_betaMatrix_ex2.R R/data_betaMatrix_ex3.R R/data_betaMatrix_ex4.R R/data_pheno_df.R R/lmmTest.R R/lmmTestAllRegions.R R/util1_OrderCpGsByLocation.R R/util2_NameRegion.R R/util3_SplitCpGsSubregionsDataFrameToList.R R/util4_RegionsToRanges.R R/utils_CreateParallelWorkers.R README.md
coMethDMR.Rproj
data/betaMatrix_ex1.rda
data/betaMatrix_ex2.rda
data/betaMatrix_ex3.rda
data/betaMatrix_ex4.rda
data/betasChr22_df.rda
data/pheno_df.rda
data/regions.rda
docs/1_Introduction_coMethDMR_10-9-2019.pdf docs/2_BiocParallel_for_coMethDMR_geneBasedPipeline.pdf docs/coMethDMR_0.0.0.9001.pdf
inst/extdata/450k_CpGstoGene_min3CpGs.rds
inst/extdata/450k_Gene_3_200.rds
inst/extdata/450k_InterGene_3_200.rds
inst/extdata/CpGislandsChr22_ex.RDS
inst/extdata/EPIC_CpGstoGene_min3CpGs.rds
inst/extdata/EPIC_Gene_3_200.rds
inst/extdata/EPIC_InterGene_3_200.rds
inst/extdata/ISLANDInd.gmt
inst/extdata/ISLAND_3_200.rds
inst/scripts/createList_InterGeneCpGs.R inst/scripts/createList_InterGeneCpGsEPIC.R inst/scripts/createList_geneCpGs.R inst/scripts/createList_geneCpGsEPIC.R inst/scripts/create_chr22exFile.R man/AnnotateResults.Rd man/CloseBySingleRegion.Rd man/CoMethAllRegions.Rd man/CoMethSingleRegion.Rd man/CpGsInfoAllRegions.Rd man/CpGsInfoOneRegion.Rd man/CreateOutputDF.Rd man/CreateParallelWorkers.Rd man/CreateRdrop.Rd man/FindComethylatedRegions.Rd man/GetCpGsInRegion.Rd man/GetResiduals.Rd man/MarkComethylatedCpGs.Rd man/NameRegion.Rd man/OrderCpGsByLocation.Rd man/RegionsToRanges.Rd man/SplitCpGDFbyRegion.Rd man/WriteCloseByAllRegions.Rd man/betaMatrix_ex1.Rd man/betaMatrix_ex2.Rd man/betaMatrix_ex3.Rd man/betaMatrix_ex4.Rd man/betasChr22_df.Rd man/lmmTest.Rd man/lmmTestAllRegions.Rd man/pheno_df.Rd tests/testthat.R tests/testthat/test_CoMethAllRegions.R tests/testthat/test_lmmTest.R tests/testthat/test_lmmTestAllRegions.R tests/testthat/test_nameRegion.R vignettes/1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd vignettes/2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd
lissettegomez/coMethDMR documentation built on Oct. 15, 2019, 4:34 p.m.