NameRegion: Name a region with several CpGs based on its genomic location
In lissettegomez/coMethDMR: Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies
Description
Usage
Arguments
Value
Examples
View source: R/util2_NameRegion.R
Description
Name a region with several CpGs based on its genomic location
Usage
1
NameRegion(CpGsOrdered_df)
Arguments
CpGsOrdered_df
dataframe with columns for Probe IDs as character (cpg),
chromosome number as character (chr) and genomic location as integer (pos)
Value
genome location of the CpGs, in the format of "chrxx:xxxxxx-xxxxxx"
Examples
1
2
3
CpGs_char <- c("cg04677227", "cg07146435", "cg11632906", "cg20214853")
CpGsOrdered_df <- OrderCpGsByLocation(CpGs_char, arrayType=c("EPIC"), output = "dataframe")
NameRegion(CpGsOrdered_df)
lissettegomez/coMethDMR documentation built on April 25, 2021, 1:10 p.m.
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Description Usage Arguments Value Examples
View source: R/util2_NameRegion.R
Description
Name a region with several CpGs based on its genomic location
Usage
1 | NameRegion(CpGsOrdered_df)
|
Arguments
CpGsOrdered_df |
dataframe with columns for Probe IDs as character (cpg), chromosome number as character (chr) and genomic location as integer (pos) |
Value
genome location of the CpGs, in the format of "chrxx:xxxxxx-xxxxxx"
Examples
1 2 3 | CpGs_char <- c("cg04677227", "cg07146435", "cg11632906", "cg20214853")
CpGsOrdered_df <- OrderCpGsByLocation(CpGs_char, arrayType=c("EPIC"), output = "dataframe")
NameRegion(CpGsOrdered_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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