Man pages for liudoubletian/phyloMDA
An R package for phylogeny-aware microbiome data analysis
| alr_trans | The additive log-ratio transformation |
| clr_trans | The centered log-ratio transformation |
| eBay_comps | An empirical Bayes approach for transforming raw counts into... |
| Extract_BIC | Calculates the Bayesian information criterion for a list of... |
| Extract_logL | Calculates the loglikelihood for a list of MGLM objects. |
| ICgenlasso | Calculates the Bayesian information criterion or Akaike's... |
| MGLMdtmFit | Fit the Dirichlet-tree multinomial (DTM) distribution. |
| MGLMdtmReg | Fit the Dirichlet-tree multinomial (DTM) regression. |
| MGLMdtmSparseReg | Fit the Dirichlet-tree multinomial (DTM) sparse regression. |
| MGLMdtmTune | Finds the tuning parameter value that yields the smallest BIC... |
| plot_onTree | Visualization on the tree |
| TASSO | Fit the Tree-guided Automatic Sub-composition Selection... |
| TreeFusedlasso | Fit the tree-guided fused lasso model. |
| YtreeFun | Calculate the count on each subtree. |
| ZIdtmFit | Fit the Zero-inflated Dirichlet-tree multinomial (ZIDTM)... |
| ZIdtmReg | Fit the Zero-inflated Dirichlet-tree multinomial (ZIDTM)... |
