clr_trans: The centered log-ratio transformation
In liudoubletian/phyloMDA: An R package for phylogeny-aware microbiome data analysis
clr_trans R Documentation
The centered log-ratio transformation
Description
The centered log-ratio transformation
Usage
clr_trans(eBay.comps)
Arguments
eBay.comps
the estimated microbial compositions by empirical Bayes.
Value
Returns the clr transfromation of microbial compositions.
Examples
library(phyloseq)
otu_tab <- t(combo.phyloseq.obj@otu_table@.Data)
tree <- phy_tree(combo.phyloseq.obj)
eBay.comps <- eBay_comps(otu_tab,prior = "Dirichlet", tree=NULL)
eBay.comps.clr <- clr_trans(eBay.comps)
liudoubletian/phyloMDA documentation built on April 28, 2022, 6:51 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| clr_trans | R Documentation |
The centered log-ratio transformation
Description
The centered log-ratio transformation
Usage
clr_trans(eBay.comps)
Arguments
eBay.comps |
the estimated microbial compositions by empirical Bayes. |
Value
Returns the clr transfromation of microbial compositions.
Examples
library(phyloseq) otu_tab <- t(combo.phyloseq.obj@otu_table@.Data) tree <- phy_tree(combo.phyloseq.obj) eBay.comps <- eBay_comps(otu_tab,prior = "Dirichlet", tree=NULL) eBay.comps.clr <- clr_trans(eBay.comps)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.