alr_trans: The additive log-ratio transformation
In liudoubletian/phyloMDA: An R package for phylogeny-aware microbiome data analysis
alr_trans R Documentation
The additive log-ratio transformation
Description
The additive log-ratio transformation
Usage
alr_trans(eBay.comps)
Arguments
eBay.comps
the estimated microbial compositions by empirical Bayes.
Value
Returns the alr transfromation of microbial compositions.
Examples
library(phyloseq)
otu_tab <- t(combo.phyloseq.obj@otu_table@.Data)
tree <- phy_tree(combo.phyloseq.obj)
eBay.comps <- eBay_comps(otu_tab,prior = "Dirichlet", tree=NULL)
eBay.comps.alr <- alr_trans(eBay.comps)
liudoubletian/phyloMDA documentation built on April 28, 2022, 6:51 p.m.
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| alr_trans | R Documentation |
The additive log-ratio transformation
Description
The additive log-ratio transformation
Usage
alr_trans(eBay.comps)
Arguments
eBay.comps |
the estimated microbial compositions by empirical Bayes. |
Value
Returns the alr transfromation of microbial compositions.
Examples
library(phyloseq) otu_tab <- t(combo.phyloseq.obj@otu_table@.Data) tree <- phy_tree(combo.phyloseq.obj) eBay.comps <- eBay_comps(otu_tab,prior = "Dirichlet", tree=NULL) eBay.comps.alr <- alr_trans(eBay.comps)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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