View source: R/Estimate.EDR.from.pilot.R
Estimate.EDR.from.pilot | R Documentation |
Estimate EDR based on p values
Estimate.EDR.from.pilot(
res,
N0,
target.N,
thresh.p = 0.005,
FDR = 0.05,
M = 10,
restrict = FALSE
)
res |
the result from DMR analysis |
N0 |
the sample size of the pilot data per group. If the two groups of the pilot data have different sample size, input can be a vector of length 2 specifying the sample size for each group. |
target.N |
the target sample size per group. Input can be a vector. If the targeted sample size is unbalanced, the input is a matrix of two columns |
thresh.p |
the threshold for CBUM mixture model fitting, default is set to 0.005 |
FDR |
the level of False discovery rate to control, by default it is set to 0.05 |
M |
the time of parametric bootstrap, default is 10 |
restrict |
restrict lambda value, default is FALSE |
A list of 3 element. The first element is a matrix of EDR, the second element is a matrix of declared Number of DMR, the third element is a matrix of empirical FDR.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.