liuqivandy/SpaGene
Identify spatially localized genes and colocalized gene pairs

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liuqivandy/SpaGene: Identify spatially localized genes and colocalized gene pairs
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Man pages for liuqivandy/SpaGene
Identify spatially localized genes and colocalized gene pairs

FindPatternFind spatial patterns
FindPattern_MultiFind spatial patterns across multiple samples
LRactivitycalculate the activity for each LR pair
plotLRplot one specific ligand-receptor pair
PlotPatternPlot patterns
PlotPattern_MultiPlot patterns across multiple samples
SpaGeneIdentify spatially variable genes
SpaGene_CTIdentify spatially variable genes within the same cell type
SpaGene_LRIdentify spatially colocalized ligand-receptor pairs
SpaGene_sparseIdentify spatially variable genes for extremely sparse data
liuqivandy/SpaGene documentation built on July 1, 2023, 6:44 a.m.

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