FindPattern_Multi: Find spatial patterns across multiple samples
In liuqivandy/SpaGene: Identify spatially localized genes and colocalized gene pairs
FindPattern_Multi R Documentation
Find spatial patterns across multiple samples
Description
Find spatial patterns across multiple samples
Usage
FindPattern_Multi(spagene_list, cutoff = 0.01, nPattern = 12)
Arguments
spagene_list
a list of results from SpaGene, each result containing normexp and spagene_res
cutoff
the adjp cutoff to select spatially variable genes (default: 0.01)
nPattern
the number of patterns (default:12)
Value
a list containing the pattern (pattern), gene similarity with the pattern (genepattern), and the pattern weight (patternw)
liuqivandy/SpaGene documentation built on July 1, 2023, 6:44 a.m.
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| FindPattern_Multi | R Documentation |
Find spatial patterns across multiple samples
Description
Find spatial patterns across multiple samples
Usage
FindPattern_Multi(spagene_list, cutoff = 0.01, nPattern = 12)
Arguments
spagene_list |
a list of results from SpaGene, each result containing normexp and spagene_res |
cutoff |
the adjp cutoff to select spatially variable genes (default: 0.01) |
nPattern |
the number of patterns (default:12) |
Value
a list containing the pattern (pattern), gene similarity with the pattern (genepattern), and the pattern weight (patternw)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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