Man pages for lixin4306ren/seqana
| annotatePeaks | peak annotate function this function find nearest gene... |
| bedtools.coveragebed | calculate overlap bedtools.coveragebed(functionstring =... |
| bedtools.coveragebed.range | calculate overlap bedtools.coveragebed.range(functionstring =... |
| cal.rpkm.chip | this function calculate RPKM for chip-seq data, support bam... |
| diff_peaks_replicate | merge peaks based on replicates and find differentially peaks... |
| generate.sliding.window | generate sliding window ranges |
| get_common_peak3 | extract common peaks based on replicates |
| merge_peaks | merge neighbouring peaks to large one by given distance |
| meth_count_region_for_bsseq | calculate methylation level based on given Grange from bsseq... |
| plot_meth_sliding_bsseq | plot and calculate methylation along sliding windows from... |
