|annotatePeaks||peak annotate function this function find nearest gene...|
|bedtools.coveragebed||calculate overlap bedtools.coveragebed(functionstring =...|
|bedtools.coveragebed.range||calculate overlap bedtools.coveragebed.range(functionstring =...|
|cal.rpkm.chip||this function calculate RPKM for chip-seq data, support bam...|
|diff_peaks_replicate||merge peaks based on replicates and find differentially peaks...|
|generate.sliding.window||generate sliding window ranges|
|get_common_peak3||extract common peaks based on replicates|
|merge_peaks||merge neighbouring peaks to large one by given distance|
|meth_count_region_for_bsseq||calculate methylation level based on given Grange from bsseq...|
|plot_meth_sliding_bsseq||plot and calculate methylation along sliding windows from...|
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