plot_meth_sliding_bsseq: plot and calculate methylation along sliding windows from...

In lixin4306ren/seqana:

Description

plot and calculate methylation along sliding windows from bsseq object this function plot and calculate slidng windows methylation

Usage

plot_meth_sliding_bsseq(BS.BM, region, win.base = 5000, step.base = 5000,
  up.base = 2e+05, down.base = 2e+05, win.percent = 0.01,
  step.percent = 0.01, up.percent = 1, down.percent = 1, min.num = 20,
  min.mc.depth = 0, frame = TRUE, main = "DNAm", col = "black",
  append = FALSE, dist = "base", x.axis = TRUE, ylim = c(0, 1))

Arguments

BS.BM	bsseq object
region	GRange object

Examples

plot_meth_sliding_bsseq()

lixin4306ren/seqana documentation built on May 20, 2019, 3:32 p.m.