annotatePeaks: peak annotate function this function find nearest gene...

In lixin4306ren/seqana:

Description

peak annotate function this function find nearest gene asscosiated with given peaks, deault database is human.gencodeV19

Usage

annotatePeaks(peaks,
  genedb = "~/amber3/no_back_up/data/R_data/human.gencodeV19",
  peak.type = "BED", by_gene = TRUE, min.distance = 2000, pro.len = 500,
  pro = TRUE, subchr = FALSE, head = FALSE)

Arguments

peaks

peak file, could be bed file path or Grange object, default bed fiel path

Examples

annotatePeaks()

lixin4306ren/seqana documentation built on May 20, 2019, 3:32 p.m.