read_PubMedRec: Tools for reading Pubmed files into R environment.

In lizandropf/ncbiRtools: Tools for searching and retrieving data from NCBI sequence databases

Description

This function reads pubmed text files from disk or those retrieve by fetchseq (within function).

Usage

read_PubMedRec(idfile, rettype)

Arguments

idfile	file path of pubmed text file.
rettype	either "docsum" or "abstract" for pubmed text file.

Details

It reads pubmed text files to disk. It is also used internally for function fetchseq to read retrieved pubmed record files from GenBank.

Author(s)

L.N. Peraza-Flores

References

For details on database visit: https://ncbi.nlm.nih.gov

See Also

searchGB, fetchseq, read_fasta, read_gb, write2fas

Examples

# load example data:

lizandropf/ncbiRtools documentation built on May 14, 2019, 8:02 a.m.