Description Usage Arguments Note Author(s) References See Also Examples
This function searches the GenBank database for retriving sequences of taxa.
1 | searchGB(term, db="nuccore", retmax=20)
|
term |
a search term to find sequence data related to it. |
db |
a database to search within, default set to "nuccore", the main sequence database. |
Depending on search terms, the data retrieved cannot be of the same taxon as the intended search term. It also retrieve the number of records associated to the search. If retmax do not include all records this information can be helpful to retrieve all data associated to the search term.
Lizandro N. Peraza-Flores
For details on database visit: https://ncbi.nlm.nih.gov
fetchseq, read_fasta, read_gb, read_PubMedRec, write2fas
1 2 | # load example data:
sear_seqs <- searchGB("Cattleya crispata", retmax=5)
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