Files in lizhongliu1996/PredictMisc
package that use three methods to predict methylation regions
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
PredictMis.Rproj
PredictMisc.Rproj
R/beta2M_wrapper.R
R/caretWrapper.R
R/data_ExampleMvalue_df.R
R/data_ExampleMvalue_test_df.R
R/data_ExampleMvalue_train_df.R
R/data_aclust.listDemo.R
R/data_chrome_annot_data.R
R/data_examplebeta_df.R
R/data_glmnet_Fit_ls.R
R/data_pfcInfo_df.R
R/data_pfc_pheno.R
R/data_rf_Fit.R
R/data_svm_Fit.R
R/evaluateGlmnet.R
R/evaluateRF.R
R/evaluateSVM.R
R/fullCpGs.R
R/getPC1.R
R/glmnetWrapper.R
R/indexMeasure.R
R/maxCpGs.R
R/methSplit.R
R/parTtest.R
R/phenoSplit.R
R/pipeAclust.R
R/pipeCometh.R
R/pipeMostSig.R
R/pipeMostVar.R
R/predict_wrapper.R
R/runAcluster.R
R/setParameters.R
R/summarizeCpGs.R
R/summaryInfo.R
R/utils_logitB.R
README.md
data/ExampleMvalue.rda
data/ExampleMvalue_test.rda
data/ExampleMvalue_train.rda
data/Example_df.rda
data/aclust.listDemo.rda
data/chrome_annot_files.rda
data/glmnet_Fit_ls.rda
data/pfcInfo_df.rda
data/pheno.rda
data/rf_Fit.rda
data/svm_Fit.rda
inst/Gabriel_Tests/runAclust_wrapper_test_20190320.R
inst/scripts/get_pfcInfo.R
man/ExampleMvalue.Rd
man/ExampleMvalue_test.Rd
man/ExampleMvalue_train.Rd
man/Example_df.Rd
man/aclust.listDemo.Rd
man/beta2M_wrapper.Rd
man/caretWrapper.Rd
man/chrome_annot_files.Rd
man/evaluateGlmnet.Rd
man/evaluateRF.Rd
man/evaluateSVM.Rd
man/fullCpGs.Rd
man/getPC1.Rd
man/glmnetWrapper.Rd
man/glmnet_Fit_ls.Rd
man/indexMeasure.Rd
man/logitB.Rd
man/maxCpGs.Rd
man/methSplit.Rd
man/parTtest.Rd
man/pfcInfo_df.Rd
man/pheno.Rd
man/phenoSplit.Rd
man/pipeAclust.Rd
man/pipeCometh.Rd
man/pipeMostSig.Rd
man/pipeMostVar.Rd
man/predict_wrapper.Rd
man/rf_Fit.Rd
man/runAcluster.Rd
man/setParameters.Rd
man/summarizeCpGs.Rd
man/summaryInfo.Rd
man/svm_Fit.Rd
tests/testthat.R
tests/testthat/test_caretWrapper.R
tests/testthat/test_evaluateGlmnet.R
tests/testthat/test_evaluateRF.R
tests/testthat/test_evaluateSVM.R
tests/testthat/test_getPC1.R
tests/testthat/test_glmnetWrapper.R
tests/testthat/test_logitB.R
tests/testthat/test_methSplit.R
tests/testthat/test_pipeMostSig.R
tests/testthat/test_pipeMostVar.R
tests/testthat/test_predict_wrapper.R
