getPC1: get PC1 of cpg list

In lizhongliu1996/PredictMisc: package that use three methods to predict methylation regions

Description

given a beta matrix with list of cpgs, extract pc1 of each slot of the list and return the pc1 score data frame

Usage

getPC1(clust_ls, train_df, test_df)

Arguments

clust_ls	list of cpgs
train_df	beta or M value matrix with train samples
test_df	beta or M value matrix with test samples

Value

a list contains performance of predicition

Examples

## Not run: 
  data(aclust.listDemo)
  data(ExampleMvalue_train)
  data(ExampleMvalue_test)

   test <- getPC1(
   clust_ls = aclust.listDemo,
   train_df = ExampleMvalue_train[,-1],
   test_df = ExampleMvalue_test[,-1]
 )

## End(Not run)

lizhongliu1996/PredictMisc documentation built on Aug. 23, 2019, 5:55 a.m.