| aclust.listDemo | This is data to be included in my package |
| beta2M_wrapper | wrapper function to do beta to m value transformation |
| caretWrapper | warpper function of parameters for ramdom forest or suppport... |
| chrome_annot_files | This is data to be included in my package |
| evaluateGlmnet | function to do prediction and evaluate based on the results... |
| evaluateRF | function to do prediction and evaluate based on the results... |
| evaluateSVM | function to do prediction and evaluate based on the results... |
| Example_df | This is data to be included in my package |
| ExampleMvalue | This is data to be included in my package |
| ExampleMvalue_test | This is data to be included in my package |
| ExampleMvalue_train | This is data to be included in my package |
| fullCpGs | select method that use all cpgs within aclust or cometh... |
| getPC1 | get PC1 of cpg list |
| glmnet_Fit_ls | This is data to be included in my package |
| glmnetWrapper | warpper function of parameters for glmnet function |
| indexMeasure | function that input a data table, returns a table that... |
| logitB | function that do logit transformation |
| maxCpGs | select method that find the maximum expression within a... |
| methSplit | function that split methylation data into train and test |
| parTtest | function that do parallel t test and elect results based on... |
| pfcInfo_df | This is data to be included in my package |
| pheno | This is data to be included in my package |
| phenoSplit | function that split phenoData into train and test |
| pipeAclust | Evaluate Prediction on Methylation Data |
| pipeCometh | Evaluate Prediction on Methylation Data |
| pipeMostSig | Evaluate 'glmnet' Prediction on Methylation Data |
| pipeMostVar | Evaluate 'glmnet' Prediction on Methylation Data |
| predict_wrapper | wrapper function of three prediction methods |
| rf_Fit | This is data to be included in my package |
| runAcluster | function that run parallel acluster algorithm given a... |
| setParameters | function that set parameters for glmnet |
| summarizeCpGs | summarize function that choose cpgs based on different... |
| summaryInfo | function that create a information data frame that storage... |
| svm_Fit | This is data to be included in my package |
