boundEntropy: boundEntropy function

In lloydlow/EntropyCorrect: Entropy correction of a Multiple Sequence Alignment (MSA) sample

Description

This function is one of the functions that makes EntropyMSA works.

Usage

boundEntropy(H, n, totalCharacters = 21)

Arguments

H	The is the calculated H, entropy value, to be bounded by the maximum entropy and minimum entropy possible.
n	By default, n = 1, which means only a single character per alignment column per sequence. For example, users may change to n = 9 for nonamer scoring instead of monomer.
totalCharacters	This depends on whether the standard 20 amino acids plus a gap scoring is used or not. Users may set this to 20 if they wish to ignore gap character.

Examples

#see EntropyMSA function

lloydlow/EntropyCorrect documentation built on May 21, 2019, 7:34 a.m.