window_size_cor: window_size_cor function

In lloydlow/EntropyCorrect: Entropy correction of a Multiple Sequence Alignment (MSA) sample

Description

This function is one of the functions that makes EntropyMSA works.

Usage

window_size_cor(MSA3, n, randomise)

Arguments

MSA3	The input is a multiple sequence alignment in FASTA format.
n	By default, n = 1, which means only a single character per alignment column per sequence. For example, users may change to n = 9 for nonamer scoring instead of monomer.
randomise	This parameter allows users to try other corrected entropy values. By default, set.seed is used in entropy correction and hence, same values are produced, which made it easier for the empiral study to determine the effects of correction in various sample and population sizes.

Examples

#see EntropyMSA function

lloydlow/EntropyCorrect documentation built on May 21, 2019, 7:34 a.m.