activate | Determine the context of subsequent manipulations. |
add_column | Add column |
add_elements | Add elements to a TidySet |
add_relation | Add relations |
add_relations | Add relations to a TidySet |
add_sets | Add sets to a TidySet |
adjacency | Adjacency |
arrange_ | Arrange the order of a TidySet |
as.data.frame.TidySet | Transforms a TidySet to a data.frame |
as.list.TidySet | Convert to list |
BaseSet-package | BaseSet: Working with Sets the Tidy Way |
cardinality | Cardinality or membership of sets |
cartesian | Create the cartesian product of two sets |
complement | Complement TidySet |
complement_element | Complement of elements |
complement_set | Complement of a set |
c-TidySet-method | Combine Values into a Vector or List |
df2TS | The opposite of as.data.frame |
dimnames.TidySet | Dimnames of a TidySet |
droplevels.TidySet | Drop unused elements and sets |
elements | Elements of the TidySet |
element_size | Calculates the size of the elements |
extract-TidySet | Extract |
fapply | Apply to fuzzy |
filter_ | Filter TidySet |
getGAF | Read a GAF file |
getGMT | Import GMT (Gene Matrix Transposed) files |
getOBO | Read an OBO file |
group | Create a new set from existing elements |
group_by_ | group_by TidySet |
incidence | Incidence |
independent | Independence of the sets |
intersection | Intersection of two or more sets |
is.fuzzy | Check if a TidySet is fuzzy. |
is_nested | Are some sets as elements of other sets? |
length_probability | Calculates the probability of a single length |
length_set | Calculates the probability |
lengths-TidySet-method | Lengths of the TidySet |
length.TidySet | Length of the TidySet |
move_to | Move columns between slots |
multiply_probabilities | Probability of a vector of probabilities |
mutate_ | Mutate |
name_elements | Name elements |
name_elements-set | Rename elements |
name_sets | Name sets |
name_sets-set | Rename sets |
names.TidySet | Names of a TidySet |
naming | Name an operation |
nElements | Number of elements |
nRelations | Number of relations |
nSets | Number of sets |
power_set | Create the power set |
pull_ | Pull from a TidySet |
reexports | Objects exported from other packages |
relations | Relations of the TidySet |
remove_column | Remove column |
remove_element | Remove elements |
remove_relation | Remove a relation |
remove_set | Remove sets |
rename_elements | Rename elements |
rename_set | Rename sets |
select_ | select from a TidySet |
sets | Sets of the TidySet |
set_size | Calculates the size of a set |
set_symbols | A subset of symbols related to sets |
show-TidySet-method | Method to show the TidySet object |
size | Size |
subtract | Subtract |
tidySet | Create a TidySet object |
TidySet-class | A tidy class to represent a set |
union | Join sets |
union_closed | Union closed sets |
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