weighted: Weighted operations

In llrs/BioCor: Functional similarities

Weighted operations

Description

Calculates the weighted sum or product of x. Each values should have its weight, otherwise it will throw an error.

Usage

weighted.sum(x, w, abs = TRUE)

weighted.prod(x, w)

Arguments

x	an object containing the values whose weighted operations is to be computed
w	a numerical vector of weights the same length as x giving the weights to use for elements of x.
abs	If any x is negative you want the result negative too?

Details

This functions are thought to be used with similarities. As some similarities might be positive and others negative the argument abs is provided for weighted.sum, assuming that only one similarity will be negative (usually the one coming from expression correlation).

Value

weighted.sum returns the sum of the product of x*weights removing all NA values. See parameter abs if there are any negative values.

weighted.prod returns the product of product of x*weights removing all NA values.

Author(s)

Lluís Revilla

See Also

weighted.mean(), similarities() and addSimilarities()

Examples

expr <- c(-0.2, 0.3, 0.5, 0.8, 0.1)
weighted.sum(expr, c(0.5, 0.2, 0.1, 0.1, 0.1))
weighted.sum(expr, c(0.5, 0.2, 0.1, 0.2, 0.1), FALSE)
weighted.sum(expr, c(0.4, 0.2, 0.1, 0.2, 0.1))
weighted.sum(expr, c(0.4, 0.2, 0.1, 0.2, 0.1), FALSE)
weighted.sum(expr, c(0.4, 0.2, 0, 0.2, 0.1))
weighted.sum(expr, c(0.5, 0.2, 0, 0.2, 0.1))
# Compared to weighted.prod:
weighted.prod(expr, c(0.5, 0.2, 0.1, 0.1, 0.1))
weighted.prod(expr, c(0.4, 0.2, 0.1, 0.2, 0.1))
weighted.prod(expr, c(0.4, 0.2, 0, 0.2, 0.1))
weighted.prod(expr, c(0.5, 0.2, 0, 0.2, 0.1))

llrs/BioCor documentation built on Dec. 26, 2024, 11:52 a.m.