Description Usage Arguments Examples
Provide a visual summary of the sample placement per plates, and Chi-squre test of dependence between plates and other considered variables from sample.
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object |
An object of class |
main |
Mail title on the bar plot. |
... |
Additional plot parameters. |
1 2 3 4 5 6 7 8 9 10 11 12 | library("OSAT")
inPath <- system.file("extdata", package="OSAT")
pheno <- read.table(file.path(inPath, 'samples.txt'), header=TRUE, sep="\t")
## create object to hold sample information
gs <- setup.sample(pheno, optimal=c("SampleType", "Race", "AgeGrp"), strata=c("SampleType") )
## create object that represents the used in the experiment
gc <- setup.container(IlluminaBeadChip96Plate, 6, batch='plates')
## create an optimized setup.
# demonstration only. nSim=5000 or more are commonly used.
gSetup <- create.optimized.setup(sample=gs, container=gc, nSim=500)
QC(gSetup)
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