Description Usage Arguments Value Examples
Return a data frame that contains sample and assigned well postion.
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A data frame is returned in the order of initial sample data frame, with additional columns indicate assgined well position.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | library("OSAT")
# data as an example
inPath <- system.file("extdata", package="OSAT")
pheno <- read.table(file.path(inPath, 'samples.txt'), header=TRUE, sep="\t")
## create object to hold sample information
gs <- setup.sample(pheno, optimal=c("SampleType", "Race", "AgeGrp"), strata=c("SampleType") )
gs
gc <- setup.container(IlluminaBeadChip96Plate, 6, batch='plates')
gc
# demonstration only. nSim=5000 or more are commonly used.
gSetup <- create.optimized.setup(sample=gs, container=gc, nSim=500)
mySetup <- get.experiment.setup(gSetup)
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