create_heatmap: Method for heatmap creation

In loosolab/wilson: Web-Based Interactive Omics Visualization

Description

Method for heatmap creation

Usage

create_heatmap(
  data,
  unitlabel = "auto",
  row.label = TRUE,
  row.custom.label = NULL,
  column.label = TRUE,
  column.custom.label = NULL,
  clustering = "none",
  clustdist = "auto",
  clustmethod = "auto",
  colors = NULL,
  winsorize.colors = NULL,
  plot.method = "static",
  width = "auto",
  height = "auto",
  ppi = 72,
  scale = 1
)

Arguments

data	data.table containing plot data. First column contains row labels.
unitlabel	label of the colorbar
row.label	Logical whether or not to show row labels.
row.custom.label	Vector of custom row labels.
column.label	Logical whether or not to show column labels.
column.custom.label	Vector of custom column labels.
clustering	How to apply clustering on data. c("none", "both", "column", "row")
clustdist	Which cluster distance to use. See heatmapr.
clustmethod	Which cluster method to use. See heatmapr.
colors	Vector of colors used for color palette.
winsorize.colors	NULL or a vector of length two, giving the values of colorbar ends (default = NULL).
plot.method	Choose which method is used for plotting. Either "plotly" or "complexHeatmap" (Default = "complexHeatmap").
width	Set width of plot in cm (Default = "auto").
height	Set height of plot in cm (Default = "auto").
ppi	Pixel per inch (default = 72).
scale	Modify plot size while preserving aspect ratio (Default = 1).

Details

Width/ height limit = 500. If exceeded default to 500 and issue exceed_size = TRUE.

Value

Returns list(plot = complexHeatmap/ plotly object, width = width in cm, height = height in cm, ppi = pixel per inch, exceed_size = Boolean whether width/ height exceeded max) depending on plot.method.

loosolab/wilson documentation built on Nov. 16, 2021, 3:21 p.m.