create_geneview: Method for geneView creation

In loosolab/wilson: Web-Based Interactive Omics Visualization

Description

Method for geneView creation

Usage

create_geneview(
  data,
  grouping,
  plot.type = "line",
  facet.target = "gene",
  facet.cols = 2,
  colors = NULL,
  ylabel = NULL,
  ylimits = NULL,
  gene.label = NULL,
  plot.method = "static",
  width = "auto",
  height = "auto",
  ppi = 72,
  scale = 1
)

Arguments

data	data.table containing plot data
grouping	data.table metadata containing: column1 : key column2 : factor1
plot.type	String specifying which plot type is used c("box", "line", "violin", "bar").
facet.target	Target to plot on x-Axis c("gene", "condition").
facet.cols	Number of plots per row.
colors	Vector of colors used for color palette
ylabel	Label of the y-axis (default = NULL).
ylimits	Vector defining scale of y-axis (default = NULL).
gene.label	Vector of labels used instead of gene names (default = NULL).
plot.method	Choose which method used for plotting. Either "static" or "interactive" (Default = "static").
width	Set the width of the plot in cm (default = "auto").
height	Set the height of the plot in cm (default = "auto").
ppi	Pixel per inch (default = 72).
scale	Modify plot size while preserving aspect ratio (Default = 1).

Details

Width/ height limit = 500. If exceeded default to 500 and issue exceed_size = TRUE.

Value

Returns depending on plot.method list(plot = ggplot/ plotly object, width = width in cm, height = height in cm, ppi = pixel per inch, exceed_size = Boolean).

loosolab/wilson documentation built on Nov. 16, 2021, 3:21 p.m.