create_scatterplot: Method for scatter plot creation

In loosolab/wilson: Web-Based Interactive Omics Visualization

Description

Method for scatter plot creation

Usage

create_scatterplot(
  data,
  data.labels = NULL,
  data.hovertext = NULL,
  transparency = 1,
  pointsize = 1,
  labelsize = 3,
  color = NULL,
  x_label = "",
  y_label = "",
  z_label = "",
  density = TRUE,
  line = TRUE,
  categorized = FALSE,
  highlight.data = NULL,
  highlight.labels = NULL,
  highlight.hovertext = NULL,
  highlight.color = "#FF0000",
  xlim = NULL,
  ylim = NULL,
  colorbar.limits = NULL,
  width = "auto",
  height = "auto",
  ppi = 72,
  plot.method = "static",
  scale = 1
)

Arguments

data	data.table containing plot data column 1: id column 2, 3(, 4): x, y(, z)
data.labels	Vector of labels used for data. Length has to be equal to nrow(data).
data.hovertext	Character vector with additional hovertext. Length has to be equal to nrow(data).
transparency	Set point transparency. See geom_point.
pointsize	Set point size. See geom_point.
labelsize	Set label size. See geom_text.
color	Vector of colors used for color palette.
x_label	Label x-Axis
y_label	Label Y-Axis
z_label	Label Z-Axis
density	Boolean value, perform 2d density estimate.
line	Boolean value, add reference line.
categorized	Z-Axis (if exists) as categories.
highlight.data	data.table containing data to highlight. Same structure as data.
highlight.labels	Vector of labels used for highlighted data. Length has to be equal to nrow(highlight.data).
highlight.hovertext	Character vector with additional hovertext. Length has to be equal to nrow(highlight.data).
highlight.color	String with hexadecimal color-code.
xlim	Numeric vector of two setting min and max limit of x-axis. See lims.
ylim	Numeric vector of two setting min and max limit of y-axis. See lims.
colorbar.limits	Vector with min, max values for colorbar (Default = NULL).
width	Set plot width in cm (Default = "auto").
height	Set plot height in cm (Default = "auto").
ppi	Pixel per inch (default = 72).
plot.method	Whether the plot should be 'interactive' or 'static' (Default = 'static').
scale	Modify plot size while preserving aspect ratio (Default = 1).

Details

Width/ height limit = 500. If exceeded default to 500 and issue exceed_size = TRUE.

Value

Returns list(plot = ggplotly/ ggplot, width, height, ppi, exceed_size).

loosolab/wilson documentation built on Nov. 16, 2021, 3:21 p.m.