circos_link: A modified circos plot from OmicCircos package

Description Usage Arguments Value References

Description

To draw circular plot with links shows contamination paired samples

Usage

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circos_link (mapping, xc, yc, R, W,cir, type, print.chr.lab, cex,lwd, col,
side,scale,seg.lab.size, link.wd,lower_arch,line_type)

Arguments

mapping

data frame, circos plot data

xc

integer, circle center x coordinate

yc

integer, circle center y coordinate

R

interger, circle radius

W

interger, circle width

cir

data frame, circle circumference

type

character, plot type [chr|link]

print.chr.lab

logical, TRUE: print chr label, FALSE: not print chr label

cex

numeric, plot font size

lwd

interger, line width

col

vector, colors

side

character, segment label position [in|out]

scale

logic, scale the circos size (default: FALSE)

seg.lab.size

numeric, segment label font size (default: 1)

link.wd

numeric, link width (default: 1)

lower_arch

numeric, (default: 1)

line_type

character, line type (default: "l")

Value

png figure at output directory

References

TBA


lpwgit/contPredict documentation built on May 7, 2019, 10:52 p.m.