plot_circos_link: Plot circos with links to show contamination samples

In lpwgit/contPredict: contPredict R Package

Description

This function reads in circos plotdata and creates circos plot

Usage

plot_circos_link (file,R,W,plotsize,titleStr,seg.lab.size,fig.file,
contaminatedOnly,sameSubjectOnly,allSamples,output_path)

Arguments

file	character, circos data file name with its path
R	integer, circle radius
W	integer, segment width
plotsize	integer, figure size
titleStr	character, title of circos plot
seg.lab.size	numeric, segment label font size
fig.file	character, circos figure file name
contaminatedOnly	logical, TRUE: only plot contaminated pairs (default: TRUE)
sameSubjectOnly	logical, TRUE: only plot same subject pairs (default: FALSE)
allSamples	character vector, sample ids
output_path	character, directory

Value

png figure at output directory

References

TBA

lpwgit/contPredict documentation built on May 7, 2019, 10:52 p.m.