wcit: A "which cell is that" function.
In lubianat/wcit: Which Cell is That (WCIT) points out the likely cell identity from a list of markers

This function allows you to infer the cell identity from a list of putative markers

1	wcit(markers, panglao = TRUE, CellMarkers = TRUE)

`markers`	A vector containing the gene markers in Gene Symbol format, for humans
`panglao`	A boolean determining if panglaoDB is going to be used or not. Defaults to TRUE
`CellMarkers`	A boolean determining if CellMarkersDB is going to be used or not. Defaults to TRUE

A list of putative cell types

1
2
3

# B cell markers
  markers <- c("CD79A", "CD79B", "MS4A1")
  marker_hits <- wcit(markers)

lubianat/wcit documentation built on Dec. 5, 2019, 7:17 p.m.

lubianat/wcit index

README.md

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description