Man pages for lucidif/HiCeekR
GUI for Hi-C data analysis
| as.brute.matrix | as.brute.matrix |
| as.sym.matrix | Title |
| bamMatching | bamMatching |
| bamPca | bamPCA |
| bamToDataFrame | bamToDataframe |
| bck_diffHic_Normalization_Server | diffHic_Normalization_Server |
| bck_diffHic_Normalization_UI | diffHic_Normalization_UI |
| busyIndServer | BusyIndServer |
| busyIndUI | busyIndUI |
| callModuleDescription | callmoduleDescription |
| chromoR_Normalization_Server | chromoR_Normalization_Server |
| chromoR_Normalization_UI | chromoR_Normalization_UI |
| detectChromos | Title |
| detectMatrixCoordinate | Title |
| DiffHiC_BinningV2_Server | DiffHiC_BinningV2_Server |
| DiffHiC_BinningV2_UI | DiffHiC_BinningV2_UI |
| diffHic_Normalization_Server | diffHic_Normalization_Server |
| diffHic_Normalization_UI | diffHic_Normalization_UI |
| directoryInput | Directory Selection Control |
| EpigeneticFeatures_Server | pca_postProcessing_Server |
| EpigeneticFeatures_UI | pca_postProcessing_UI |
| errorFunc | errorFunc |
| extractContact | extractContact |
| FilmodServer | FilmodServer |
| FilmodUI | FilmodUI |
| findRegionInBint | findRegionInBint |
| folderFrame | folderFrame |
| folderList | folderList |
| hcrBck | hcrBck |
| HCRobserveEvent | HCRobserveEvent |
| HCRprjManager | HCRprjManager |
| HCRread | HCRread |
| HCRunlist | HCRunlist |
| HCRwrite | HCRwrite |
| HiCeekR | Run HiCeekR |
| hmmDI | hmmDI |
| HMM_postProcessing_Server | HMM_postProcessing_Server |
| HMM_postProcessing_UI | HMM_postProcessing_UI |
| importAnnotation | importAnnotation |
| importChrFromFragList | importChrFromFragList |
| javaNs | javaNs |
| mainNav | mainNav |
| makeBranch | makeBranch |
| makeConfig | makeConfig |
| makeHCRan | makeHCRan |
| makeHCRprj | make HiCeekR project folder |
| makeHCRwd | makeHiCeekRwd |
| matrixExport | matrixExport |
| matrixWithNames | matrixWithNames |
| mergeBed | Title |
| moduleBranchPanel | moduleBranchPanel |
| moduleRestartPanel | moduleRestartPanel |
| moduleStartPanel | moduleStartPanel |
| moduleStartPanel2 | moduleStartPanel2 |
| moduleTemplate_Server | moduleTemplate_Server |
| moduleTemplate_UI | moduleTemplate_UI |
| moduleTest | moduleTest |
| obtainName | obtainName |
| obtainWd | obtainWd |
| pcaMatrixModel | pcaMatrixModel |
| pca_postProcessing_Server | pca_postProcessing_Server |
| pca_postProcessing_UI | pca_postProcessing_UI |
| pointin | pointin |
| predictTADs | predictTADs |
| prjManagerMainUI | prjManagerMainUI |
| prjManPanel_analysisSettings | prjManPanel_analysisSettings |
| prjManPanel_anlysisInputType | prjManPanel_analysisInputType |
| prjManPanel_inputBAM | prjManPanel_inputBAM |
| prjManPanel_inputMatrix | prjManPanel_inputMatrix |
| prjManPanel_inputMulti | prjManPanel_inputMulti |
| prjManPanel_loadProject | prjManPanel_loadProject |
| prjManPanel_newProject | prjManPanel_newProject |
| prjManPanel_prjSelector | prjManPanel_prjSelector |
| prjManPanel_reset | prjManPanel_reset |
| prjManPanel_welcome | prjManPanel_welcome |
| prjSettings_Server | prjSettings_Server |
| prjSettings_UI | prjSettings_UI |
| readDirectoryInput | Read the value of a directoryInput |
| refGenomeEdit | refGenomeEdit |
| regionsInMatrix | regionsInMatrix |
| restartFrom | restartFrom |
| searchTicks | searchTicks |
| selectFile | selectFile |
| setHCRwd | setHCRwd |
| shinyDirPath | shinyDirPath |
| shinyFilesPath | shinyFilesPath |
| sum_Server | sum_Server |
| sum_UI | sum_UI |
| TADsV2_Visualization_Server | TADsV2_Visualization_Server |
| TADsV2_Visualization_UI | TADsV2_Visualization_UI |
| test | Test |
| testInfoTable | testInfoTable |
| tickOptions | tickOptions |
| ticksNames | ticksNames |
| updateDirectoryInput | Change the value of a directoryInput on the client |
| zScore | zScore |
