Man pages for lucidif/HiCeekR
GUI for Hi-C data analysis

as.brute.matrixas.brute.matrix
as.sym.matrixTitle
bamMatchingbamMatching
bamPcabamPCA
bamToDataFramebamToDataframe
bck_diffHic_Normalization_ServerdiffHic_Normalization_Server
bck_diffHic_Normalization_UIdiffHic_Normalization_UI
busyIndServerBusyIndServer
busyIndUIbusyIndUI
callModuleDescriptioncallmoduleDescription
chromoR_Normalization_ServerchromoR_Normalization_Server
chromoR_Normalization_UIchromoR_Normalization_UI
detectChromosTitle
detectMatrixCoordinateTitle
DiffHiC_BinningV2_ServerDiffHiC_BinningV2_Server
DiffHiC_BinningV2_UIDiffHiC_BinningV2_UI
diffHic_Normalization_ServerdiffHic_Normalization_Server
diffHic_Normalization_UIdiffHic_Normalization_UI
directoryInputDirectory Selection Control
EpigeneticFeatures_Serverpca_postProcessing_Server
EpigeneticFeatures_UIpca_postProcessing_UI
errorFuncerrorFunc
extractContactextractContact
FilmodServerFilmodServer
FilmodUIFilmodUI
findRegionInBintfindRegionInBint
folderFramefolderFrame
folderListfolderList
hcrBckhcrBck
HCRobserveEventHCRobserveEvent
HCRprjManagerHCRprjManager
HCRreadHCRread
HCRunlistHCRunlist
HCRwriteHCRwrite
HiCeekRRun HiCeekR
hmmDIhmmDI
HMM_postProcessing_ServerHMM_postProcessing_Server
HMM_postProcessing_UIHMM_postProcessing_UI
importAnnotationimportAnnotation
importChrFromFragListimportChrFromFragList
javaNsjavaNs
mainNavmainNav
makeBranchmakeBranch
makeConfigmakeConfig
makeHCRanmakeHCRan
makeHCRprjmake HiCeekR project folder
makeHCRwdmakeHiCeekRwd
matrixExportmatrixExport
matrixWithNamesmatrixWithNames
mergeBedTitle
moduleBranchPanelmoduleBranchPanel
moduleRestartPanelmoduleRestartPanel
moduleStartPanelmoduleStartPanel
moduleStartPanel2moduleStartPanel2
moduleTemplate_ServermoduleTemplate_Server
moduleTemplate_UImoduleTemplate_UI
moduleTestmoduleTest
obtainNameobtainName
obtainWdobtainWd
pcaMatrixModelpcaMatrixModel
pca_postProcessing_Serverpca_postProcessing_Server
pca_postProcessing_UIpca_postProcessing_UI
pointinpointin
predictTADspredictTADs
prjManagerMainUIprjManagerMainUI
prjManPanel_analysisSettingsprjManPanel_analysisSettings
prjManPanel_anlysisInputTypeprjManPanel_analysisInputType
prjManPanel_inputBAMprjManPanel_inputBAM
prjManPanel_inputMatrixprjManPanel_inputMatrix
prjManPanel_inputMultiprjManPanel_inputMulti
prjManPanel_loadProjectprjManPanel_loadProject
prjManPanel_newProjectprjManPanel_newProject
prjManPanel_prjSelectorprjManPanel_prjSelector
prjManPanel_resetprjManPanel_reset
prjManPanel_welcomeprjManPanel_welcome
prjSettings_ServerprjSettings_Server
prjSettings_UIprjSettings_UI
readDirectoryInputRead the value of a directoryInput
refGenomeEditrefGenomeEdit
regionsInMatrixregionsInMatrix
restartFromrestartFrom
searchTickssearchTicks
selectFileselectFile
setHCRwdsetHCRwd
shinyDirPathshinyDirPath
shinyFilesPathshinyFilesPath
sum_Serversum_Server
sum_UIsum_UI
TADsV2_Visualization_ServerTADsV2_Visualization_Server
TADsV2_Visualization_UITADsV2_Visualization_UI
testTest
testInfoTabletestInfoTable
tickOptionstickOptions
ticksNamesticksNames
updateDirectoryInputChange the value of a directoryInput on the client
zScorezScore
lucidif/HiCeekR documentation built on Dec. 9, 2019, 7:34 p.m.