API for lucidif/HiCeekR
GUI for Hi-C data analysis

Global functions
DiffHiC_BinningV2_Server Man page Source code
DiffHiC_BinningV2_UI Man page Source code
FilmodServer Man page Source code
FilmodUI Man page Source code
HCRobserveEvent Man page Source code
HCRprjManager Man page Source code
HCRread Man page Source code
HCRunlist Man page Source code
HCRwrite Man page Source code
HMM_postProcessing_Server Man page Source code
HMM_postProcessing_UI Man page Source code
HiCeekR Man page Source code
TADsV2_Visualization_Server Man page Source code
TADsV2_Visualization_UI Man page Source code
as.brute.matrix Man page Source code
bamMatching Man page Source code
bamPca Man page Source code
bamToDataFrame Man page Source code
busyIndServer Man page Source code
busyIndUI Man page Source code
callModuleDescription Man page Source code
chromoR_Normalization_Server Man page Source code
chromoR_Normalization_UI Man page Source code
diffHic_Normalization_Server Man page Source code
diffHic_Normalization_UI Man page Source code
directoryInput Man page Source code
errorFunc Man page Source code
extractContact Man page Source code
findRegionInBint Man page Source code
folderFrame Man page Source code
folderList Man page Source code
hcrBck Man page Source code
hmmDI Man page Source code
importAnnotation Man page Source code
importChrFromFragList Man page Source code
javaNs Man page Source code
mainNav Man page Source code
makeBranch Man page Source code
makeConfig Man page Source code
makeHCRan Man page Source code
makeHCRprj Man page Source code
makeHCRwd Man page Source code
makeInset Source code
matrixExport Man page Source code
matrixWithNames Man page Source code
moduleBranchPanel Man page Source code
moduleRestartPanel Man page Source code
moduleStartPanel Man page Source code
moduleStartPanel2 Man page Source code
moduleTemplate_Server Man page Source code
moduleTemplate_UI Man page Source code
moduleTest Man page Source code
networksV2_Visualization_Server Source code
networksV2_Visualization_UI Source code
obtainName Man page Source code
obtainWd Man page Source code
pcaComp_postProcessing_Server Man page Source code
pcaComp_postProcessing_UI Man page Source code
pcaMatrixModel Man page Source code
pca_postProcessing_Server Man page Source code
pca_postProcessing_UI Man page Source code
pointin Man page Source code
prjManPanel_analysisSettings Man page Source code
prjManPanel_anlysisInputType Man page Source code
prjManPanel_inputBAM Man page Source code
prjManPanel_inputMatrix Man page Source code
prjManPanel_inputMulti Man page Source code
prjManPanel_loadProject Man page Source code
prjManPanel_newProject Man page Source code
prjManPanel_prjSelector Man page Source code
prjManPanel_reset Man page Source code
prjManPanel_welcome Man page Source code
prjMan_UI Source code
prjMan_server Source code
prjManagerMainUI Man page Source code
prjSettings_Server Man page Source code
prjSettings_UI Man page Source code
readContactMatrix Source code
readDirectoryInput Man page Source code
refGenomeEdit Man page Source code
regionsInMatrix Man page Source code
restartFrom Man page Source code
searchTicks Man page Source code
selectFile Man page Source code
setHCRwd Man page Source code
shinyDirPath Man page Source code
shinyFilesPath Man page Source code
sum_Server Man page Source code
sum_UI Man page Source code
test Man page Source code
testInfoTable Man page Source code
tickOptions Man page Source code
ticksNames Man page Source code
updateDirectoryInput Man page Source code
zScore Man page Source code
lucidif/HiCeekR documentation built on Sept. 28, 2018, 9:08 a.m.