R/vMod1_projectSettings.R
In lucidif/HiCeekR: GUI for Hi-C data analysis
Defines functions
prjSettings_Server
prjSettings_UI
Documented in
prjSettings_Server
prjSettings_UI
#' prjSettings_UI
#'
#' @param id
#' @param label
#'
#' @return
#' @keywords internal
#'
#' @examples
prjSettings_UI <- function(id, label="prjSettings"){
ns <- shiny::NS(id)
shiny::fluidPage(
shiny::fluidRow(shiny::column(12,
shiny::wellPanel("Project",
shiny::fluidRow(
shiny::column(3,
shiny::uiOutput(ns("selector"))
),
shiny::column(6,
shiny::uiOutput(ns("prjName"))
),
shiny::column(3,
shiny::br(),
shiny::br(),
shiny::uiOutput(ns("executeBut"))
)
),
shiny::fluidRow(
shiny::column(12,
shiny::uiOutput(ns("anSetted"))
)
)
)
)
),
shiny::fluidRow(
#shiny::fluidRow(
shiny::column(12,
shiny::uiOutput(ns("anSettings"))
)
#)
),
shiny::fluidRow(
shiny::column(12,
shiny::dataTableOutput(ns("pathViewer"))
)
)
)
}
#' prjSettings_Server
#'
#' @param input
#' @param output
#' @param session
#' @param prjManExport
#'
#' @return
#' @keywords internal
#'
#' @examples
prjSettings_Server <- function(input, output, session, prjManExport){
#preliminary stataments==============================
nspace<-session$ns
workingDir<-as.character((read.table('HCRwd.info'))[1,1])
rea<-reactiveValues()
output$selector<-shiny::renderUI({
shiny::selectInput(nspace("loadNewPrj"),
label=h5(""),
choices=c("new",
"load"))
})
output$pathViewer<-shiny::renderDataTable({
folderFrame(paste0(workingDir, "Projects/"))
})
prjManExport<-reactiveValues()
#=====================================================
shiny::observeEvent(input$loadNewPrj,{
if (input$loadNewPrj == "load"){
output$prjName<-shiny::renderUI({
shiny::fluidRow(
shiny::column(2,
shiny::br(),
shiny::helpText("name:")
),
shiny::column(6,
shiny::selectInput(nspace("prjLoadName"),
label=h5(""),
choices=as.array(
list.files(pointin(workingDir,
"Projects"))
))
),
shiny::column(4,
shiny::br(),
shiny::actionButton(nspace('prjButton'),
label="load this")
)
)
})
# output$executeBut<-shiny::renderUI({
# shiny::actionButton(nspace('prjButton'), label="load this")
# })
}
if (input$loadNewPrj == "new"){
output$prjName<-shiny::renderUI({
shiny::fluidRow(
shiny::column(2,
shiny::br(),
shiny::helpText("name:")
),
shiny::column(6,
shiny::textInput(nspace("prjNewName"),
label=h5(""),
value=""
)
),
shiny::column(4,
shiny::br(),
shiny::actionButton(nspace("prjButton"),
label="make new")
)
)
})
# output$executeBut<-renderUI({
# shiny::actionButton(nspace("prjButton"), label="make new")
# })
}
})
shiny::observeEvent(input$prjButton,{
if(input$loadNewPrj == "new"){
pName<-input$prjNewName
}else{
pName<-input$prjLoadName
}
rea$anFolder<-paste0(workingDir, pName, "/")
output$selector<-shiny::renderUI({
shiny::fluidRow(column(12))
})
output$prjName<-shiny::renderUI({
})
output$executeBut<-shiny::renderUI({})
output$anSetted<-shiny::renderUI({
shiny::fluidRow(
shiny::column(9,
shiny::helpText(paste0('project selected: ',
pName))
),
shiny::column(3,
shiny::actionButton(nspace("resetPrj"), label="reset project"))
)
})
output$anSettings<-shiny::renderUI({
shiny::wellPanel(
shiny::br(),
shiny::br(),
shiny::fluidRow(
shiny::column(3,
shiny::selectInput(nspace("loadNewAn"),
label=h5("Analysis Settings"),
choices=c("new","load"))
),
shiny::column(6,
shiny::uiOutput(nspace("anNames"))
),
shiny::column(3,
shiny::br(),
shiny::br(),
shiny::uiOutput(nspace("anExecuteBut"))
)
),
shiny::fluidRow(
shiny::column(12,
shiny::uiOutput(nspace("anOptionsSlot"))
)
),
shiny::fluidRow(
shiny::column(12,
shiny::uiOutput(nspace("anOptionsSlot2"))
)
),
shiny::fluidRow( shiny::br(),
shiny::column(12,
shiny::uiOutput(nspace("anOptionsSlot3"))
)
)
)
})
})
shiny::observeEvent(input$resetPrj,{
output$anSettings<-shiny::renderUI({})
output$selector<-shiny::renderUI({
#shiny::br(),
shiny::selectInput(nspace("loadNewPrj"),
label=h5(""),
choices=c("new",
"load"))
})
if (input$loadNewPrj == "load"){
output$prjName<-shiny::renderUI({
shiny::fluidRow(
shiny::column(2,
shiny::br(),
shiny::helpText("name:")
),
shiny::column(6,
shiny::selectInput(nspace("prjLoadName"),
label=h5(""),
choices=as.array(
list.files(pointin(workingDir,
"Projects"))
))
),
shiny::column(4,
shiny::br(),
shiny::actionButton(nspace('prjButton'), label="load this")
)
)
})
# output$executeBut<-shiny::renderUI({
# shiny::actionButton(nspace('prjButton'), label="load this")
# })
}
if (input$loadNewPrj == "new"){
output$prjName<-shiny::renderUI({
shiny::fluidRow(
shiny::column(2,
shiny::br(),
shiny::helpText("name:")
),
shiny::column(6,
shiny::textInput(nspace("prjNewName"),
label=h5(""),
value=""
)
),
shiny::column(4,
shiny::br(),
shiny::actionButton(nspace("prjButton"), label="make new")
)
)
})
}
output$pathViewer<-shiny::renderDataTable({
folderFrame(paste0(workingDir, "Projects/"))
})
output$anSetted<-shiny::renderUI({})
}) #fine reset button
shiny::observeEvent(input$loadNewAn,{
if(input$loadNewAn == "new"){
output$anNames<-shiny::renderUI({
shiny::textInput(nspace("anNewName"), label=h5("Analysis"))
})
output$anExecuteBut<-shiny::renderUI({
#shiny::actionButton(nspace("anButton"), label="make")
})
output$anOptionsSlot2<-shiny::renderUI({
shiny::fluidRow(
shiny::column(4, shiny::br(), shiny::br(), shiny::br(),
shiny::helpText("input file type: ")
),
shiny::column(5, shiny::br(), shiny::br(),
shiny::selectInput(nspace("inputType"),
label = h5(""),
choices = c("BAM",
"Matrix")
#,"Multi")
)
)
,shiny::column(3, shiny::br(), shiny::br(),
shiny::actionButton(nspace("newAnalysis"),
label = h5("make new analysis mod"),
width = "100%"
)
)
)
})
output$anOptionsSlot3<-shiny::renderUI({
shiny::fluidRow(shiny::column(12,
shiny::fluidRow(
shiny::column(4,shiny::br(),
shiny::helpText("Select bam file:")
),
shiny::column(8,
selectFile(nspace("bamFile"),
label=h5(""),
path=paste0(
prjManExport$prjFolder,
"/ProjectData/Hi-C/"),
subset=TRUE,
pattern=".bam"
)
# shiny::fileInput(nspace("bamFile"),
# label=h5("")
# )
)
),
shiny::fluidRow(
shiny::column(2,
shiny::helpText("Set Enzyme")
),
shiny::column(5,
shiny::textInput(nspace("cutSite"),
label = shiny::h5("cut site"),
value = "ACTGC"
)
),
shiny::column(5,
shiny::numericInput(
nspace("overhang"),
label=shiny::h5("overhang"),
value = 3
)
)
),
shiny::fluidRow(
#shiny::fluidRow(
shiny::column(2,
shiny::helpText("Other options")
),
shiny::column(5,
shiny::selectInput(
nspace("binSize"),
label = "bin size",
choices = c( "1000000",
"100000",
"50000",
"20000",
"10000"
)
)
),
shiny::column(5, br(),
shiny::checkboxInput(
nspace("lowMem"),
label = h5("low memory"),
value = FALSE
)
)
#)
)
))#input BAM panel
})
# output$anOptionsSlot<-shiny::renderUI({
# shiny::fluidRow(
# shiny::column(6,
# shiny::selectInput(nspace("newLoadSelector"),
# label = h5("analysis"),
# choices = c("new","load")
# ),
# shiny::uiOutput(nspace("anActionButtonSlot"))
# )
# )
# })
}
if(input$loadNewAn == "load"){
output$anNames<-shiny::renderUI({
shiny::selectInput(nspace("anLoadNames"), label=h5("Analysis"),
choices=c(list.dirs(rea$anFolder))
)
})
output$anExecuteBut<-shiny::renderUI({
shiny::actionButton(nspace("anButtonLoad"), label="load")
})
output$anOptionsSlot2<-shiny::renderUI({})
output$anOptionsSlot3<-shiny::renderUI({})
}
output$pathViewer<-shiny::renderDataTable({
folderFrame(rea$anFolder)
})
})
shiny::observeEvent(input$inputType,{
if (input$inputType == "BAM"){
output$anOptionsSlot3<-shiny::renderUI({
shiny::fluidRow(
shiny::column(12,
shiny::fluidRow(
shiny::column(4,shiny::br(),
shiny::helpText("Select bam file:")
),
shiny::column(8,
selectFile(nspace("bamFile"),
path=paste0(
prjManExport$prjFolder,
"/ProjectData/Hi-C/"),
label=h5(""),
subset=TRUE,
pattern=".bam"
)
# shiny::fileInput(nspace("bamFile"),
# label=h5("")
# )
)
),
shiny::fluidRow(
shiny::column(2,
shiny::helpText("Set Enzyme")
),
shiny::column(5,
shiny::textInput(nspace("cutSite"),
label = shiny::h5("cut site"),
value = "ACTGC"
)
),
shiny::column(5,
shiny::numericInput(nspace("overhang"),
label=shiny::h5("overhang"),
value = 3
)
)
),
shiny::fluidRow(
#shiny::fluidRow(
shiny::column(2,
shiny::helpText("Other options")
),
shiny::column(5,
shiny::selectInput(nspace("binSize"),
label = "bin size",
choices = c( "1000000",
"100000",
"50000",
"20000",
"10000"
)
)
),
shiny::column(5, br(),
shiny::checkboxInput(nspace("lowMem"),
label = h5("low memory"),
value = FALSE
)
)
#)
),
shiny::fluidRow(
)
))
})
#input$inputType == "BAM"
} else {
if (input$inputType == "Matrix") {
output$anOptionsSlot3<-shiny::renderUI({
shiny::fluidRow(
shiny::column(12,
shiny::fluidRow(
shiny::column(4,shiny::br(),
shiny::helpText("Select matrix:")
),
shiny::column(8,
shiny::fileInput(nspace("maFile"),
label=h5("")
)
)
),
shiny::fluidRow(
shiny::column(2,
shiny::helpText("Matrix Type")
),
shiny::column(5,
shiny::selectInput(nspace("maType"),
label="",
choices=c("simmetric",
"reduced"
)
)
),
shiny::column(5,
shiny::selectInput(nspace("maCounts"),
label="",
choices=c("raw",
"Normalized"
)
)
)
)
)
)
})
} else {#input$inputType == "Multi"
output$anOptionsSlot3<-shiny::renderUI({
shiny::fluidRow(
shiny::column(12,
shiny::fileInput(nspace("loadMultiFiles"),
label=h5("please select
interesting files"),
multiple=TRUE
)
)
)
})
}
}
})
#==================================================
# observe Buttons
#==================================================
shiny::observeEvent(input$prjButton,{
if (input$loadNewPrj == "new"){
print(paste0("make new prj: ",paste0(workingDir,"Projects/")))
makeHCRprj(input$prjNewName, paste0(workingDir,"Projects/"))
prjManExport$prjFolder <- paste0(workingDir,"Projects/",
input$prjNewName, "/"
)
print(prjManExport$prjFolder)
} else { #input$loadNewPrj == "load"
prjManExport$prjFolder <- paste0(workingDir,"Projects/",
input$prjLoadName, "/"
)
print(prjManExport$prjFolder)
}
})
shiny::observeEvent(input$newAnalysis,{
if (input$loadNewPrj=="new"){
prjName<-input$prjNewName
} else {#input$loadNewPrj=="load"
prjName<-input$prjLoadName
}
if (input$inputType == "BAM"){
it<-matrix(ncol=2, nrow=5)
it[,1]<-c("InputName", "Resolution", "Type",
"AnalysisName", "ProjectName")
inBamTT<<-input$bamFile$name
inbinTT<<-input$binSize
inTyYY<<-input$inputType
prjNaTT<<-prjName
inanNaTT<<-input$anNewName
it[,2]<-c(input$bamFile$name, input$binSize, input$inputType,
prjName, input$anNewName)
makeHCRan(input$anNewName, prjManExport$prjFolder, infoTable=it)
} else {
if (input$inputType == "Matrix"){
}
}
})
}
lucidif/HiCeekR documentation built on Jan. 31, 2021, 10:30 p.m.
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Defines functions prjSettings_Server prjSettings_UI
Documented in prjSettings_Server prjSettings_UI
#' prjSettings_UI
#'
#' @param id
#' @param label
#'
#' @return
#' @keywords internal
#'
#' @examples
prjSettings_UI <- function(id, label="prjSettings"){
ns <- shiny::NS(id)
shiny::fluidPage(
shiny::fluidRow(shiny::column(12,
shiny::wellPanel("Project",
shiny::fluidRow(
shiny::column(3,
shiny::uiOutput(ns("selector"))
),
shiny::column(6,
shiny::uiOutput(ns("prjName"))
),
shiny::column(3,
shiny::br(),
shiny::br(),
shiny::uiOutput(ns("executeBut"))
)
),
shiny::fluidRow(
shiny::column(12,
shiny::uiOutput(ns("anSetted"))
)
)
)
)
),
shiny::fluidRow(
#shiny::fluidRow(
shiny::column(12,
shiny::uiOutput(ns("anSettings"))
)
#)
),
shiny::fluidRow(
shiny::column(12,
shiny::dataTableOutput(ns("pathViewer"))
)
)
)
}
#' prjSettings_Server
#'
#' @param input
#' @param output
#' @param session
#' @param prjManExport
#'
#' @return
#' @keywords internal
#'
#' @examples
prjSettings_Server <- function(input, output, session, prjManExport){
#preliminary stataments==============================
nspace<-session$ns
workingDir<-as.character((read.table('HCRwd.info'))[1,1])
rea<-reactiveValues()
output$selector<-shiny::renderUI({
shiny::selectInput(nspace("loadNewPrj"),
label=h5(""),
choices=c("new",
"load"))
})
output$pathViewer<-shiny::renderDataTable({
folderFrame(paste0(workingDir, "Projects/"))
})
prjManExport<-reactiveValues()
#=====================================================
shiny::observeEvent(input$loadNewPrj,{
if (input$loadNewPrj == "load"){
output$prjName<-shiny::renderUI({
shiny::fluidRow(
shiny::column(2,
shiny::br(),
shiny::helpText("name:")
),
shiny::column(6,
shiny::selectInput(nspace("prjLoadName"),
label=h5(""),
choices=as.array(
list.files(pointin(workingDir,
"Projects"))
))
),
shiny::column(4,
shiny::br(),
shiny::actionButton(nspace('prjButton'),
label="load this")
)
)
})
# output$executeBut<-shiny::renderUI({
# shiny::actionButton(nspace('prjButton'), label="load this")
# })
}
if (input$loadNewPrj == "new"){
output$prjName<-shiny::renderUI({
shiny::fluidRow(
shiny::column(2,
shiny::br(),
shiny::helpText("name:")
),
shiny::column(6,
shiny::textInput(nspace("prjNewName"),
label=h5(""),
value=""
)
),
shiny::column(4,
shiny::br(),
shiny::actionButton(nspace("prjButton"),
label="make new")
)
)
})
# output$executeBut<-renderUI({
# shiny::actionButton(nspace("prjButton"), label="make new")
# })
}
})
shiny::observeEvent(input$prjButton,{
if(input$loadNewPrj == "new"){
pName<-input$prjNewName
}else{
pName<-input$prjLoadName
}
rea$anFolder<-paste0(workingDir, pName, "/")
output$selector<-shiny::renderUI({
shiny::fluidRow(column(12))
})
output$prjName<-shiny::renderUI({
})
output$executeBut<-shiny::renderUI({})
output$anSetted<-shiny::renderUI({
shiny::fluidRow(
shiny::column(9,
shiny::helpText(paste0('project selected: ',
pName))
),
shiny::column(3,
shiny::actionButton(nspace("resetPrj"), label="reset project"))
)
})
output$anSettings<-shiny::renderUI({
shiny::wellPanel(
shiny::br(),
shiny::br(),
shiny::fluidRow(
shiny::column(3,
shiny::selectInput(nspace("loadNewAn"),
label=h5("Analysis Settings"),
choices=c("new","load"))
),
shiny::column(6,
shiny::uiOutput(nspace("anNames"))
),
shiny::column(3,
shiny::br(),
shiny::br(),
shiny::uiOutput(nspace("anExecuteBut"))
)
),
shiny::fluidRow(
shiny::column(12,
shiny::uiOutput(nspace("anOptionsSlot"))
)
),
shiny::fluidRow(
shiny::column(12,
shiny::uiOutput(nspace("anOptionsSlot2"))
)
),
shiny::fluidRow( shiny::br(),
shiny::column(12,
shiny::uiOutput(nspace("anOptionsSlot3"))
)
)
)
})
})
shiny::observeEvent(input$resetPrj,{
output$anSettings<-shiny::renderUI({})
output$selector<-shiny::renderUI({
#shiny::br(),
shiny::selectInput(nspace("loadNewPrj"),
label=h5(""),
choices=c("new",
"load"))
})
if (input$loadNewPrj == "load"){
output$prjName<-shiny::renderUI({
shiny::fluidRow(
shiny::column(2,
shiny::br(),
shiny::helpText("name:")
),
shiny::column(6,
shiny::selectInput(nspace("prjLoadName"),
label=h5(""),
choices=as.array(
list.files(pointin(workingDir,
"Projects"))
))
),
shiny::column(4,
shiny::br(),
shiny::actionButton(nspace('prjButton'), label="load this")
)
)
})
# output$executeBut<-shiny::renderUI({
# shiny::actionButton(nspace('prjButton'), label="load this")
# })
}
if (input$loadNewPrj == "new"){
output$prjName<-shiny::renderUI({
shiny::fluidRow(
shiny::column(2,
shiny::br(),
shiny::helpText("name:")
),
shiny::column(6,
shiny::textInput(nspace("prjNewName"),
label=h5(""),
value=""
)
),
shiny::column(4,
shiny::br(),
shiny::actionButton(nspace("prjButton"), label="make new")
)
)
})
}
output$pathViewer<-shiny::renderDataTable({
folderFrame(paste0(workingDir, "Projects/"))
})
output$anSetted<-shiny::renderUI({})
}) #fine reset button
shiny::observeEvent(input$loadNewAn,{
if(input$loadNewAn == "new"){
output$anNames<-shiny::renderUI({
shiny::textInput(nspace("anNewName"), label=h5("Analysis"))
})
output$anExecuteBut<-shiny::renderUI({
#shiny::actionButton(nspace("anButton"), label="make")
})
output$anOptionsSlot2<-shiny::renderUI({
shiny::fluidRow(
shiny::column(4, shiny::br(), shiny::br(), shiny::br(),
shiny::helpText("input file type: ")
),
shiny::column(5, shiny::br(), shiny::br(),
shiny::selectInput(nspace("inputType"),
label = h5(""),
choices = c("BAM",
"Matrix")
#,"Multi")
)
)
,shiny::column(3, shiny::br(), shiny::br(),
shiny::actionButton(nspace("newAnalysis"),
label = h5("make new analysis mod"),
width = "100%"
)
)
)
})
output$anOptionsSlot3<-shiny::renderUI({
shiny::fluidRow(shiny::column(12,
shiny::fluidRow(
shiny::column(4,shiny::br(),
shiny::helpText("Select bam file:")
),
shiny::column(8,
selectFile(nspace("bamFile"),
label=h5(""),
path=paste0(
prjManExport$prjFolder,
"/ProjectData/Hi-C/"),
subset=TRUE,
pattern=".bam"
)
# shiny::fileInput(nspace("bamFile"),
# label=h5("")
# )
)
),
shiny::fluidRow(
shiny::column(2,
shiny::helpText("Set Enzyme")
),
shiny::column(5,
shiny::textInput(nspace("cutSite"),
label = shiny::h5("cut site"),
value = "ACTGC"
)
),
shiny::column(5,
shiny::numericInput(
nspace("overhang"),
label=shiny::h5("overhang"),
value = 3
)
)
),
shiny::fluidRow(
#shiny::fluidRow(
shiny::column(2,
shiny::helpText("Other options")
),
shiny::column(5,
shiny::selectInput(
nspace("binSize"),
label = "bin size",
choices = c( "1000000",
"100000",
"50000",
"20000",
"10000"
)
)
),
shiny::column(5, br(),
shiny::checkboxInput(
nspace("lowMem"),
label = h5("low memory"),
value = FALSE
)
)
#)
)
))#input BAM panel
})
# output$anOptionsSlot<-shiny::renderUI({
# shiny::fluidRow(
# shiny::column(6,
# shiny::selectInput(nspace("newLoadSelector"),
# label = h5("analysis"),
# choices = c("new","load")
# ),
# shiny::uiOutput(nspace("anActionButtonSlot"))
# )
# )
# })
}
if(input$loadNewAn == "load"){
output$anNames<-shiny::renderUI({
shiny::selectInput(nspace("anLoadNames"), label=h5("Analysis"),
choices=c(list.dirs(rea$anFolder))
)
})
output$anExecuteBut<-shiny::renderUI({
shiny::actionButton(nspace("anButtonLoad"), label="load")
})
output$anOptionsSlot2<-shiny::renderUI({})
output$anOptionsSlot3<-shiny::renderUI({})
}
output$pathViewer<-shiny::renderDataTable({
folderFrame(rea$anFolder)
})
})
shiny::observeEvent(input$inputType,{
if (input$inputType == "BAM"){
output$anOptionsSlot3<-shiny::renderUI({
shiny::fluidRow(
shiny::column(12,
shiny::fluidRow(
shiny::column(4,shiny::br(),
shiny::helpText("Select bam file:")
),
shiny::column(8,
selectFile(nspace("bamFile"),
path=paste0(
prjManExport$prjFolder,
"/ProjectData/Hi-C/"),
label=h5(""),
subset=TRUE,
pattern=".bam"
)
# shiny::fileInput(nspace("bamFile"),
# label=h5("")
# )
)
),
shiny::fluidRow(
shiny::column(2,
shiny::helpText("Set Enzyme")
),
shiny::column(5,
shiny::textInput(nspace("cutSite"),
label = shiny::h5("cut site"),
value = "ACTGC"
)
),
shiny::column(5,
shiny::numericInput(nspace("overhang"),
label=shiny::h5("overhang"),
value = 3
)
)
),
shiny::fluidRow(
#shiny::fluidRow(
shiny::column(2,
shiny::helpText("Other options")
),
shiny::column(5,
shiny::selectInput(nspace("binSize"),
label = "bin size",
choices = c( "1000000",
"100000",
"50000",
"20000",
"10000"
)
)
),
shiny::column(5, br(),
shiny::checkboxInput(nspace("lowMem"),
label = h5("low memory"),
value = FALSE
)
)
#)
),
shiny::fluidRow(
)
))
})
#input$inputType == "BAM"
} else {
if (input$inputType == "Matrix") {
output$anOptionsSlot3<-shiny::renderUI({
shiny::fluidRow(
shiny::column(12,
shiny::fluidRow(
shiny::column(4,shiny::br(),
shiny::helpText("Select matrix:")
),
shiny::column(8,
shiny::fileInput(nspace("maFile"),
label=h5("")
)
)
),
shiny::fluidRow(
shiny::column(2,
shiny::helpText("Matrix Type")
),
shiny::column(5,
shiny::selectInput(nspace("maType"),
label="",
choices=c("simmetric",
"reduced"
)
)
),
shiny::column(5,
shiny::selectInput(nspace("maCounts"),
label="",
choices=c("raw",
"Normalized"
)
)
)
)
)
)
})
} else {#input$inputType == "Multi"
output$anOptionsSlot3<-shiny::renderUI({
shiny::fluidRow(
shiny::column(12,
shiny::fileInput(nspace("loadMultiFiles"),
label=h5("please select
interesting files"),
multiple=TRUE
)
)
)
})
}
}
})
#==================================================
# observe Buttons
#==================================================
shiny::observeEvent(input$prjButton,{
if (input$loadNewPrj == "new"){
print(paste0("make new prj: ",paste0(workingDir,"Projects/")))
makeHCRprj(input$prjNewName, paste0(workingDir,"Projects/"))
prjManExport$prjFolder <- paste0(workingDir,"Projects/",
input$prjNewName, "/"
)
print(prjManExport$prjFolder)
} else { #input$loadNewPrj == "load"
prjManExport$prjFolder <- paste0(workingDir,"Projects/",
input$prjLoadName, "/"
)
print(prjManExport$prjFolder)
}
})
shiny::observeEvent(input$newAnalysis,{
if (input$loadNewPrj=="new"){
prjName<-input$prjNewName
} else {#input$loadNewPrj=="load"
prjName<-input$prjLoadName
}
if (input$inputType == "BAM"){
it<-matrix(ncol=2, nrow=5)
it[,1]<-c("InputName", "Resolution", "Type",
"AnalysisName", "ProjectName")
inBamTT<<-input$bamFile$name
inbinTT<<-input$binSize
inTyYY<<-input$inputType
prjNaTT<<-prjName
inanNaTT<<-input$anNewName
it[,2]<-c(input$bamFile$name, input$binSize, input$inputType,
prjName, input$anNewName)
makeHCRan(input$anNewName, prjManExport$prjFolder, infoTable=it)
} else {
if (input$inputType == "Matrix"){
}
}
})
}
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