Files in lucidif/HiCeekR
GUI for Hi-C data analysis

.Rbuildignore
.gitignore
DESCRIPTION
HiCeekR.Rproj
LICENSE
NAMESPACE
R/directoryInput.R R/global.R R/server.R R/ui.R R/vApp_projectManager.R R/vFun_HCRobserveEv.R R/vFun_HCRwrite&read.R R/vFun_asBruteMatrix.R R/vFun_bamMatching.R R/vFun_bamToDataframe.R R/vFun_callModuleDescription.R R/vFun_clickBusy.R R/vFun_extractContact.R R/vFun_findRegionsInBint.R R/vFun_folderFrame.R R/vFun_folderList.R R/vFun_hcrBck.R R/vFun_heatmaply_tickNames.R R/vFun_heatmaply_tickOptions.R R/vFun_hmmDI.R R/vFun_importAnnotation.R R/vFun_importChrFromFragList.R R/vFun_mainNavBar.R R/vFun_makeBranch.R R/vFun_makeInset.R R/vFun_matrixExport.R R/vFun_matrixWithNames.R R/vFun_obtainName.R R/vFun_pointin.R R/vFun_prjManager.R R/vFun_prova.R R/vFun_readContactMatrix.R R/vFun_refGenomeEdit.R R/vFun_regionsInMatrix.R R/vFun_restartFrom.R R/vFun_runApp.R R/vFun_runModule.R R/vFun_selectFile.R R/vFun_shinyFilesPath.R R/vFun_testInput.R R/vFun_xPanels_moduleStartPanel.R R/vFun_xPanels_prjManager.R R/vFun_zScore.R R/vFuns_PCA.R R/vMod0_moduleTemplate.R R/vMod1_filtering.R R/vMod1_projectSettings.R R/vMod2_Binning.R R/vMod3_ICEnormalization.R R/vMod3_wavSisNormalization.R R/vMod4_EpigeneticFeatures.R R/vMod4_HMMdownstream.R R/vMod4_PCAdownstream.R R/vMod5_NetworksVisualization.R R/vMod5_heatmapVisualization.R R/vMod6_summary.R R/vScript_prelim.R R/vScript_runModule.R R/vfun_heatmaply_searchTick.R R/vfun_javaNsInput.R README.md man/DiffHiC_BinningV2_Server.Rd man/DiffHiC_BinningV2_UI.Rd man/FilmodServer.Rd man/FilmodUI.Rd man/HCRobserveEvent.Rd man/HCRprjManager.Rd man/HCRread.Rd man/HCRunlist.Rd man/HCRwrite.Rd man/HMM_postProcessing_Server.Rd man/HMM_postProcessing_UI.Rd man/HiCeekR.Rd man/TADsV2_Visualization_Server.Rd man/TADsV2_Visualization_UI.Rd man/as.brute.matrix.Rd man/bamMatching.Rd man/bamPca.Rd man/bamToDataFrame.Rd man/busyIndServer.Rd man/busyIndUI.Rd man/callModuleDescription.Rd man/chromoR_Normalization_Server.Rd man/chromoR_Normalization_UI.Rd man/diffHic_Normalization_Server.Rd man/diffHic_Normalization_UI.Rd man/directoryInput.Rd man/errorFunc.Rd man/extractContact.Rd man/findRegionInBint.Rd man/folderFrame.Rd man/folderList.Rd man/hcrBck.Rd man/hmmDI.Rd man/importAnnotation.Rd man/importChrFromFragList.Rd man/javaNs.Rd man/mainNav.Rd man/makeBranch.Rd man/makeConfig.Rd man/makeHCRan.Rd man/makeHCRprj.Rd man/makeHCRwd.Rd man/matrixExport.Rd man/matrixWithNames.Rd man/moduleBranchPanel.Rd man/moduleRestartPanel.Rd man/moduleStartPanel.Rd man/moduleStartPanel2.Rd man/moduleTemplate_Server.Rd man/moduleTemplate_UI.Rd man/moduleTest.Rd man/obtainName.Rd man/obtainWd.Rd man/pcaComp_postProcessing_Server.Rd man/pcaComp_postProcessing_UI.Rd man/pcaMatrixModel.Rd man/pca_postProcessing_Server.Rd man/pca_postProcessing_UI.Rd man/pointin.Rd man/prjManPanel_analysisSettings.Rd man/prjManPanel_anlysisInputType.Rd man/prjManPanel_inputBAM.Rd man/prjManPanel_inputMatrix.Rd man/prjManPanel_inputMulti.Rd man/prjManPanel_loadProject.Rd man/prjManPanel_newProject.Rd man/prjManPanel_prjSelector.Rd man/prjManPanel_reset.Rd man/prjManPanel_welcome.Rd man/prjManagerMainUI.Rd man/prjSettings_Server.Rd man/prjSettings_UI.Rd man/readDirectoryInput.Rd man/refGenomeEdit.Rd man/regionsInMatrix.Rd man/restartFrom.Rd man/searchTicks.Rd man/selectFile.Rd man/setHCRwd.Rd man/shinyDirPath.Rd man/shinyFilesPath.Rd man/sum_Server.Rd man/sum_UI.Rd man/test.Rd man/testInfoTable.Rd man/tickOptions.Rd man/ticksNames.Rd man/updateDirectoryInput.Rd man/zScore.Rd
vignettes/HCRwd.info
vignettes/HiCeekR.Rmd
www/busy_icon.png
www/js/directory_input_binding.js
www/loaderBar.gif
lucidif/HiCeekR documentation built on Sept. 28, 2018, 9:08 a.m.