Man pages for luciorq/txomics
Functional Analysis and Visualization of Transcriptomic Data
| calc_var_by_row | Calculate Variance by Row |
| de_analysis | Perform Differential Expression Analysis |
| draw_colnames_45 | plot aux function |
| filter_tx | Filter Imported Transcripts |
| gsea_analysis | Perform Gene Set Enrichment Analysis |
| import_tx | Import Expression Data |
| le_analysis | Perform Leading Edge Analysis |
| multiplot | Multiple Plot |
| pipe | Pipe, as in Pipeline |
| plot_deg_heatmap | Plot Differentially Expressed Genes Heatmap |
| plot_gene_expression | Plot Gene Expression |
| plot_gsea | Plot GSEA Enrichment Curve and Table |
| plot_gsea_heatmap | Plot a Heatmap From gsea_analysis |
| plot_gsea_res | Plot GSEA Results and Leading Edge |
| plot_heatmap | Plot a Heatmap From Expression Data |
| plot_le_heatmap | Plot Leading Edge Heatmap |
| plot_pca | Plot Flat Three Dimensional PCA |
| plot_venn_diagram | Plot Venn Diagram |
| plot_volcano | Volcano Plot |
| prepare_tx_mat | plot aux function 2 |
| retrieve_deg | Retrieve Differentially Expressed Genes |
| retrieve_deg_table | Differential Expression results |
| retrieve_le_table | Leading Edge Genes By Gene Set |
| retrieve_mapping_rate | Retrieve Mapping Rate |
| retrieve_metadata_sra | retrieve metadata from NCBI SRA |
| salmon_libtype | Infer Library Construction Type |
| txomics-package | txomics: Functional Analysis and Visualization of... |
