| adj_mat | adj_mat: Function to compute the adjacency matrix of an area. |
| bam-class | Class 'bam' digram |
| bam_clusters | bam_clusters: Function to estimate the connectivity of... |
| bam_islands | bam_islands: Estimates the number of connected patches of a... |
| bam_sim | bam_sim: Simulate dispersal dynamics using the set B of the... |
| bam_ssim | bam_ssim: Simulate dispersal dynamics using the set B of the... |
| bioindex-class | Class 'bioindex' |
| bioindex_sparse-class | Class 'bioindex_sparse' |
| community_sim | community_bam: Community 'bam' |
| community_sim-class | Class 'community_sim' digram |
| csd-class | Class 'csd' |
| csd_estimate | csd_estimate: Estimate the connectivity suitability and... |
| csim2pam | csim2pam: Converts community simulation to a Presence Absence... |
| diversity_range_analysis | range_diversity_analysis: diversity analysis |
| diversity_range-class | Class 'diversity_range' |
| dot-nonzero | Helper function to compute the elements in g0 that have no... |
| eigen_bam | eigen_bam: Compute the Eigen system of two bam objects |
| g_area-class | S4 classes to organize data and results of 'bam' objects |
| jaccard | jaccard: Estimates the Jaccard index for comparing two binary... |
| model2sparse | model2sparse: Converts a niche model into a diagonal sparse... |
| models2pam | models2pam: Converts binary rasters to a PAM |
| null_dispersion_field_distribution | null_dispersion_field_distribution: Null distribution of the... |
| occs2sparse | occs2sparse: Converts occurrence data into a sparse matrix... |
| pam2bioindex | pam2bioindex: PAM to biodiversity index |
| pam2richness | pam2richness: Converts Presence Absence Matrix (pam object)... |
| pam-class | Class 'pam' Presence-Absence Matrix |
| permute_pam | permute_pam: Function to permute a Presence-Absence-Matrix. |
| plot | Plot method for objects of class diversity_range 'bam'. |
| predict | Predict method of the package 'bam'. |
| sdm_sim | sdm_sim: Simulate single species dispersal dynamics using the... |
| setA | Class for the A set of the BAM diagram |
| setM-class | Class for the M set of the 'bam' digram |
| shape2Grid | shape2Grid: Function to create a grid given a spatial polygon |
| show | Show information in setA class 'bam'. |
| sim2Animation | sim2Animation: Animate BAM simulation object. |
| sim2Raster | sim2Raster: Convert a BAM simulation object to RasterStack |
